Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12528 | Canola | nucleus | 93.62 | 93.62 |
| Bra012329.1-P | Field mustard | nucleus | 97.87 | 91.09 |
| CDX91680 | Canola | nucleus | 77.31 | 76.22 |
| CDY41479 | Canola | nucleus | 76.6 | 75.52 |
| CDY04811 | Canola | nucleus | 79.43 | 74.42 |
| CDY21365 | Canola | nucleus | 78.72 | 73.75 |
| AT1G22490.2 | Thale cress | nucleus | 76.6 | 66.26 |
| CDY37634 | Canola | nucleus | 47.16 | 58.33 |
| CDX96382 | Canola | nucleus | 61.7 | 53.54 |
| CDX72877 | Canola | nucleus | 61.35 | 52.74 |
| CDY50447 | Canola | nucleus | 60.28 | 52.47 |
| CDX68274 | Canola | nucleus | 59.93 | 52.16 |
| CDY03650 | Canola | nucleus | 58.87 | 50.92 |
| CDX82171 | Canola | nucleus | 58.51 | 50.61 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 49.65 | 45.16 |
| KRH62289 | Soybean | nucleus | 50.0 | 43.52 |
| KRH16792 | Soybean | nucleus | 48.94 | 42.59 |
| KRH53000 | Soybean | nucleus | 49.65 | 41.92 |
| KRH72411 | Soybean | nucleus | 49.65 | 40.46 |
| Solyc12g087850.1.1 | Tomato | nucleus | 22.7 | 39.51 |
| PGSC0003DMT400005446 | Potato | nucleus | 45.74 | 37.39 |
| CDY03201 | Canola | cytosol | 23.76 | 37.02 |
| Solyc04g074810.2.1 | Tomato | extracellular | 45.74 | 36.34 |
| PGSC0003DMT400045820 | Potato | nucleus | 36.17 | 34.46 |
| CDY65719 | Canola | nucleus | 36.17 | 33.89 |
| CDY41734 | Canola | nucleus | 36.17 | 33.89 |
| CDY35175 | Canola | nucleus | 34.75 | 33.33 |
| CDY37820 | Canola | nucleus | 25.18 | 32.57 |
| CDY33966 | Canola | nucleus | 33.33 | 31.13 |
| CDY63053 | Canola | nucleus | 35.11 | 30.56 |
| CDY11386 | Canola | nucleus | 29.79 | 30.11 |
| CDX77682 | Canola | nucleus | 34.4 | 29.94 |
| CDY51710 | Canola | nucleus | 31.21 | 28.3 |
| CDY07143 | Canola | nucleus | 30.14 | 27.42 |
| CDY41561 | Canola | nucleus | 30.14 | 27.24 |
| CDX80049 | Canola | nucleus | 29.43 | 26.52 |
| CDY48013 | Canola | nucleus | 29.79 | 26.42 |
| CDY68483 | Canola | nucleus | 29.79 | 26.25 |
| CDY27521 | Canola | nucleus | 28.72 | 26.13 |
| CDY24717 | Canola | nucleus | 18.44 | 25.87 |
| CDY18843 | Canola | nucleus | 18.44 | 25.87 |
| CDX76598 | Canola | nucleus | 28.72 | 25.71 |
| CDY55926 | Canola | nucleus | 29.43 | 25.7 |
| CDY58338 | Canola | nucleus | 18.79 | 25.6 |
| CDY08066 | Canola | nucleus | 18.79 | 25.6 |
| CDY05233 | Canola | nucleus | 18.09 | 25.0 |
| CDY55929 | Canola | nucleus | 27.3 | 23.05 |
| CDX77460 | Canola | nucleus | 29.08 | 23.03 |
| CDX85167 | Canola | nucleus | 30.85 | 22.36 |
| CDX92996 | Canola | nucleus | 31.21 | 21.73 |
| CDX94841 | Canola | nucleus | 31.21 | 21.57 |
| CDY19692 | Canola | nucleus | 26.24 | 20.96 |
| CDY47059 | Canola | nucleus | 25.89 | 20.92 |
| CDY14397 | Canola | nucleus | 26.24 | 20.85 |
| CDY18083 | Canola | nucleus | 28.37 | 20.83 |
| CDY38734 | Canola | nucleus | 25.53 | 20.4 |
| CDY64587 | Canola | nucleus | 26.6 | 20.22 |
| CDX96201 | Canola | nucleus | 24.82 | 19.89 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078I981 | UniProt:A0A078I981 | EnsemblPlants:CDY46652 | ProteinID:CDY46652 |
| ProteinID:CDY46652.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00085942001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 |
| PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDE75E | InterPro:bHLH_dom | SEG:seg |
Description
BnaA07g10440DBnaA07g10440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I981]
Coordinates
chrLK032680:-:158112..160457
Molecular Weight (calculated)
32361.3 Da
IEP (calculated)
6.652
GRAVY (calculated)
-0.660
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLEAVVNPQ DPVGYLSNCK DFMFHDFYYQ EEIVSQDTKN NIDTLGHEQR FVENDKEEER QWGDHHHHQC PVVPSLEEEL GLPAIDVENP PPVQQRRKKR
101: RTRSNKNKEE IENQRMTHIA VERNRRKQMN EYLAVLRSLM PLSYAQRGDQ ASIVGGAINY VKKLEHILQS MEPRRTTTTS HEADTSTSSL VCTFSDVFTF
201: PQYSKNSLSE VESSSSPAEI EVTVAEGHAN VKIMAKKKPR QLLKLVASIQ SLRLSLLHLN VTTLDNLILY SISVKNNHEI LE
101: RTRSNKNKEE IENQRMTHIA VERNRRKQMN EYLAVLRSLM PLSYAQRGDQ ASIVGGAINY VKKLEHILQS MEPRRTTTTS HEADTSTSSL VCTFSDVFTF
201: PQYSKNSLSE VESSSSPAEI EVTVAEGHAN VKIMAKKKPR QLLKLVASIQ SLRLSLLHLN VTTLDNLILY SISVKNNHEI LE
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVRTF STSHHYFVCF WGNHEIKVSN
301: DCVCGAYGFT LLIYFFVSYC WGEILD
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVRTF STSHHYFVCF WGNHEIKVSN
301: DCVCGAYGFT LLIYFFVSYC WGEILD
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.