Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80049 | Canola | nucleus | 96.47 | 96.17 |
| CDY27521 | Canola | nucleus | 71.79 | 72.26 |
| CDY48013 | Canola | nucleus | 70.19 | 68.87 |
| AT2G46810.1 | Thale cress | nucleus | 75.0 | 63.07 |
| CDY11386 | Canola | nucleus | 45.83 | 51.25 |
| CDX76598 | Canola | nucleus | 48.72 | 48.25 |
| CDY55926 | Canola | nucleus | 49.04 | 47.37 |
| CDY68483 | Canola | nucleus | 48.4 | 47.19 |
| CDY55929 | Canola | nucleus | 46.15 | 43.11 |
| VIT_15s0048g02510.t01 | Wine grape | nucleus | 45.19 | 39.06 |
| CDY37634 | Canola | nucleus | 28.21 | 38.6 |
| CDY07143 | Canola | nucleus | 37.5 | 37.74 |
| CDY51710 | Canola | nucleus | 37.5 | 37.62 |
| KRH47774 | Soybean | nucleus | 45.83 | 37.24 |
| GSMUA_Achr11P... | Banana | nucleus | 32.37 | 35.44 |
| KRH06347 | Soybean | nucleus | 45.19 | 35.43 |
| CDY41479 | Canola | nucleus | 31.09 | 33.92 |
| GSMUA_Achr5P20300_001 | Banana | nucleus | 31.41 | 33.56 |
| CDY05233 | Canola | nucleus | 21.79 | 33.33 |
| CDY24717 | Canola | nucleus | 21.47 | 33.33 |
| CDY18843 | Canola | nucleus | 21.47 | 33.33 |
| CDX91680 | Canola | nucleus | 30.13 | 32.87 |
| CDY04811 | Canola | nucleus | 31.09 | 32.23 |
| TraesCS5A01G515800.1 | Wheat | extracellular | 31.09 | 32.01 |
| HORVU4Hr1G084850.2 | Barley | extracellular | 31.09 | 32.01 |
| TraesCS4B01G347100.1 | Wheat | extracellular | 30.77 | 32.0 |
| CDY12528 | Canola | nucleus | 28.85 | 31.91 |
| CDY21365 | Canola | nucleus | 30.77 | 31.89 |
| CDY08066 | Canola | nucleus | 21.15 | 31.88 |
| CDY58338 | Canola | nucleus | 21.15 | 31.88 |
| Os03t0122100-00 | Rice | mitochondrion, nucleus, plastid | 31.73 | 31.83 |
| GSMUA_Achr11P... | Banana | nucleus | 33.65 | 31.82 |
| TraesCS4D01G342000.1 | Wheat | extracellular | 30.45 | 31.35 |
| CDY03201 | Canola | cytosol | 17.95 | 30.94 |
| Zm00001d027419_P001 | Maize | nucleus | 30.45 | 30.55 |
| Zm00001d048478_P001 | Maize | nucleus | 31.41 | 30.25 |
| CDY46652 | Canola | nucleus | 27.24 | 30.14 |
| CDY37820 | Canola | nucleus | 20.83 | 29.82 |
| CDY50447 | Canola | nucleus | 30.77 | 29.63 |
| CDX68274 | Canola | nucleus | 30.77 | 29.63 |
| CDX96382 | Canola | nucleus | 30.77 | 29.54 |
| OQU93358 | Sorghum | nucleus | 30.45 | 29.41 |
| GSMUA_Achr8P12330_001 | Banana | golgi, vacuole | 34.29 | 29.23 |
| CDX72877 | Canola | nucleus | 30.45 | 28.96 |
| CDY03650 | Canola | nucleus | 30.13 | 28.83 |
| CDX82171 | Canola | nucleus | 29.81 | 28.53 |
| CDY35175 | Canola | nucleus | 26.6 | 28.23 |
| CDY65719 | Canola | nucleus | 26.92 | 27.91 |
| CDY41734 | Canola | nucleus | 26.92 | 27.91 |
| CDX77682 | Canola | nucleus | 28.53 | 27.47 |
| CDY63053 | Canola | nucleus | 27.88 | 26.85 |
| CDY33966 | Canola | nucleus | 25.0 | 25.83 |
| CDY38734 | Canola | nucleus | 23.72 | 20.96 |
| CDX85167 | Canola | nucleus | 25.96 | 20.82 |
| CDY19692 | Canola | nucleus | 23.4 | 20.68 |
| CDY47059 | Canola | nucleus | 23.08 | 20.63 |
| CDY14397 | Canola | nucleus | 23.4 | 20.56 |
| CDX77460 | Canola | nucleus | 23.4 | 20.51 |
| CDX92996 | Canola | nucleus | 26.28 | 20.25 |
| CDX94841 | Canola | nucleus | 25.96 | 19.85 |
| CDX96201 | Canola | nucleus | 21.79 | 19.32 |
| CDY64587 | Canola | nucleus | 21.79 | 18.33 |
| CDY18083 | Canola | nucleus | 22.44 | 18.23 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078HV32 | UniProt:A0A078HV32 | EnsemblPlants:CDY41561 | ProteinID:CDY41561 |
| ProteinID:CDY41561.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00073196001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR11969 | PANTHER:PTHR11969:SF29 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE148D | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g00610DBnaC04g00610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HV32]
Coordinates
chrLK032500:+:226728..228281
Molecular Weight (calculated)
35955.8 Da
IEP (calculated)
8.870
GRAVY (calculated)
-0.679
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKIQGQNK LSSLDQKVIV RRSLQVQGSS EDQRFVLEED TMQQSEDLSS VLSFKDPNFL RLLSLQTLQK PPWELGDYLP HEVPEFHSPT NYYHQNPSLE
101: RINEAISSQE LQLNPQRKRR NNNNLVAASV SREKRKRKRT KPTKNTEEME SQRMTHITVE RNRRRQMNVY LSSLRSLIPS SYILRGDQAS IVGGAIDFVK
201: LLEQQLQSLE AQKVTQQTDT KDISLEQSSK LRIDATVIES HVNLKIQCQK KQGQLLRSII WLEKLRFTVL HLNVTSPCNA SASYSFNLKM EDDCTLTSAD
301: EITAAVRQIL DC
101: RINEAISSQE LQLNPQRKRR NNNNLVAASV SREKRKRKRT KPTKNTEEME SQRMTHITVE RNRRRQMNVY LSSLRSLIPS SYILRGDQAS IVGGAIDFVK
201: LLEQQLQSLE AQKVTQQTDT KDISLEQSSK LRIDATVIES HVNLKIQCQK KQGQLLRSII WLEKLRFTVL HLNVTSPCNA SASYSFNLKM EDDCTLTSAD
301: EITAAVRQIL DC
001: MERSIQGQNK LCCLDQKVNV RRSLQVQETV EDHQSFALEE EEQQLSTPSL LQDTTIPFLQ MLQQSEDPSP FLSFKDPSFL ALLSLQTLEK PWELENYLPH
101: EVPEFHSPIH SETNHYYHNP SLEGVNEAIS NQELPFNPLE NARSRRKRKN NNLASLMTRE KRKRRRTKPT KNIEEIESQR MTHIAVERNR RRQMNVHLNS
201: LRSIIPSSYI QRGDQASIVG GAIDFVKILE QQLQSLEAQK RSQQSDDNKE QIPEDNSLRN ISSNKLRASN KEEQSSKLKI EATVIESHVN LKIQCTRKQG
301: QLLRSIILLE KLRFTVLHLN ITSPTNTSVS YSFNLKMEDE CNLGSADEIT AAIRQIFDS
101: EVPEFHSPIH SETNHYYHNP SLEGVNEAIS NQELPFNPLE NARSRRKRKN NNLASLMTRE KRKRRRTKPT KNIEEIESQR MTHIAVERNR RRQMNVHLNS
201: LRSIIPSSYI QRGDQASIVG GAIDFVKILE QQLQSLEAQK RSQQSDDNKE QIPEDNSLRN ISSNKLRASN KEEQSSKLKI EATVIESHVN LKIQCTRKQG
301: QLLRSIILLE KLRFTVLHLN ITSPTNTSVS YSFNLKMEDE CNLGSADEIT AAIRQIFDS
Arabidopsis Description
BHLH70Transcription factor bHLH70 [Source:UniProtKB/Swiss-Prot;Acc:O81037]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.