Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21365 | Canola | nucleus | 97.67 | 97.67 |
| CDY41479 | Canola | nucleus | 80.4 | 84.62 |
| CDX91680 | Canola | nucleus | 79.07 | 83.22 |
| CDY12528 | Canola | nucleus | 75.75 | 80.85 |
| CDY46652 | Canola | nucleus | 74.42 | 79.43 |
| AT1G22490.2 | Thale cress | nucleus | 75.08 | 69.33 |
| CDY37634 | Canola | nucleus | 51.16 | 67.54 |
| CDX96382 | Canola | nucleus | 64.12 | 59.38 |
| CDX72877 | Canola | nucleus | 64.12 | 58.84 |
| CDY50447 | Canola | nucleus | 62.79 | 58.33 |
| CDX68274 | Canola | nucleus | 62.46 | 58.02 |
| CDY03650 | Canola | nucleus | 61.13 | 56.44 |
| CDX82171 | Canola | nucleus | 60.8 | 56.13 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 52.49 | 50.97 |
| Solyc12g087850.1.1 | Tomato | nucleus | 26.91 | 50.0 |
| KRH62289 | Soybean | nucleus | 52.49 | 48.77 |
| KRH16792 | Soybean | nucleus | 52.49 | 48.77 |
| KRH53000 | Soybean | nucleus | 51.83 | 46.71 |
| KRH72411 | Soybean | nucleus | 52.49 | 45.66 |
| PGSC0003DMT400005446 | Potato | nucleus | 49.5 | 43.19 |
| Solyc04g074810.2.1 | Tomato | extracellular | 49.5 | 41.97 |
| PGSC0003DMT400045820 | Potato | nucleus | 39.87 | 40.54 |
| CDY03201 | Canola | cytosol | 22.92 | 38.12 |
| CDY37820 | Canola | nucleus | 26.58 | 36.7 |
| CDY65719 | Canola | nucleus | 36.54 | 36.54 |
| CDY41734 | Canola | nucleus | 36.21 | 36.21 |
| CDY63053 | Canola | nucleus | 37.87 | 35.19 |
| CDX77682 | Canola | nucleus | 37.21 | 34.57 |
| CDY33966 | Canola | nucleus | 33.89 | 33.77 |
| CDY51710 | Canola | nucleus | 34.22 | 33.12 |
| CDY35175 | Canola | nucleus | 32.23 | 32.99 |
| CDY11386 | Canola | nucleus | 29.9 | 32.26 |
| CDY07143 | Canola | nucleus | 32.89 | 31.94 |
| CDY41561 | Canola | nucleus | 32.23 | 31.09 |
| CDX80049 | Canola | nucleus | 31.56 | 30.35 |
| CDY48013 | Canola | nucleus | 31.89 | 30.19 |
| CDY68483 | Canola | nucleus | 31.89 | 30.0 |
| CDY27521 | Canola | nucleus | 30.23 | 29.35 |
| CDY55926 | Canola | nucleus | 30.9 | 28.79 |
| CDY24717 | Canola | nucleus | 18.94 | 28.36 |
| CDX76598 | Canola | nucleus | 28.9 | 27.62 |
| CDY05233 | Canola | nucleus | 18.6 | 27.45 |
| CDY58338 | Canola | nucleus | 18.6 | 27.05 |
| CDY08066 | Canola | nucleus | 18.6 | 27.05 |
| CDY18843 | Canola | nucleus | 17.94 | 26.87 |
| CDY55929 | Canola | nucleus | 28.24 | 25.45 |
| CDX85167 | Canola | nucleus | 31.23 | 24.16 |
| CDX77460 | Canola | nucleus | 28.24 | 23.88 |
| CDX92996 | Canola | nucleus | 31.56 | 23.46 |
| CDX94841 | Canola | nucleus | 30.9 | 22.79 |
| CDY19692 | Canola | nucleus | 26.25 | 22.38 |
| CDY47059 | Canola | nucleus | 25.91 | 22.35 |
| CDY14397 | Canola | nucleus | 26.25 | 22.25 |
| CDY18083 | Canola | nucleus | 28.24 | 22.14 |
| CDY64587 | Canola | nucleus | 27.24 | 22.1 |
| CDY38734 | Canola | nucleus | 25.58 | 21.81 |
| CDX96201 | Canola | nucleus | 24.25 | 20.74 |
Protein Annotations
| EnsemblPlants:CDY04811 | EnsemblPlantsGene:GSBRNA2T00119510001 | Gene3D:4.10.280.10 | GO:A0A078EU88 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDY04811 | ProteinID:CDY04811.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC38F8 | MapMan:15.5.32 | : |
Description
BnaC05g17780D
Coordinates
chrLK031957:+:990177..992361
Molecular Weight (calculated)
34615.8 Da
IEP (calculated)
6.325
GRAVY (calculated)
-0.712
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLGAVVYPQ DTSGYLSNCK DFMFYDLSYQ EEVVAQDTKN NIDTLGQEQS FVEKDEEERQ WRDYHHKYPL IPLLDEKLDL RATDVENHPP IQPRRKRRRT
101: RSNKNKEEIE SQRMTHIAVE RNRRKQMNEY LAVLRSLMPS SYAQRGDQAS IVGGAINYVK ELEHILQSME PRRTTTTTHE VDTSTSSLMS PFSEFFTYPQ
201: YSTKSSSSAT ENSSSPAEIE VTVAEGHANI KIMSKKKPRQ LLKLVDSIQS LRLTLLHLNV TTLDNSILYS ISVKVEEGSQ LNTVDDIATA LNQIIRRIQE
301: E
101: RSNKNKEEIE SQRMTHIAVE RNRRKQMNEY LAVLRSLMPS SYAQRGDQAS IVGGAINYVK ELEHILQSME PRRTTTTTHE VDTSTSSLMS PFSEFFTYPQ
201: YSTKSSSSAT ENSSSPAEIE VTVAEGHANI KIMSKKKPRQ LLKLVDSIQS LRLTLLHLNV TTLDNSILYS ISVKVEEGSQ LNTVDDIATA LNQIIRRIQE
301: E
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.