Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029088.1-P | Field mustard | nucleus | 93.98 | 97.62 |
| CDY38734 | Canola | nucleus | 98.28 | 97.17 |
| AT5G53210.1 | Thale cress | nucleus | 91.69 | 87.91 |
| CDY19692 | Canola | nucleus | 87.68 | 86.69 |
| CDY14397 | Canola | nucleus | 87.68 | 86.2 |
| CDX96201 | Canola | nucleus | 84.24 | 83.52 |
| KRH18131 | Soybean | nucleus | 60.46 | 62.8 |
| KRH64504 | Soybean | nucleus | 61.89 | 62.79 |
| KRH53438 | Soybean | nucleus | 62.46 | 62.46 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 59.31 | 61.24 |
| KRH16521 | Soybean | nucleus | 57.59 | 60.73 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 47.56 | 58.66 |
| GSMUA_Achr10P... | Banana | nucleus | 43.55 | 58.24 |
| Solyc03g007410.2.1 | Tomato | nucleus | 55.3 | 57.78 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 50.14 | 56.27 |
| PGSC0003DMT400023497 | Potato | nucleus | 56.73 | 55.77 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 50.14 | 48.08 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 49.86 | 47.8 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 49.86 | 47.67 |
| CDY05233 | Canola | nucleus | 27.79 | 47.55 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 49.57 | 47.53 |
| CDY24717 | Canola | nucleus | 27.22 | 47.26 |
| CDY08066 | Canola | nucleus | 27.51 | 46.38 |
| CDY58338 | Canola | nucleus | 27.51 | 46.38 |
| CDY18843 | Canola | nucleus | 26.65 | 46.27 |
| EER88428 | Sorghum | nucleus | 47.85 | 43.95 |
| Zm00001d046096_P001 | Maize | nucleus | 42.12 | 42.49 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 45.56 | 42.4 |
| EES06610 | Sorghum | nucleus | 47.85 | 41.96 |
| Zm00001d016095_P001 | Maize | nucleus | 46.13 | 40.97 |
| Os02t0257500-00 | Rice | nucleus | 46.42 | 39.04 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 43.84 | 38.73 |
| CDY37634 | Canola | nucleus | 22.06 | 33.77 |
| CDX77460 | Canola | nucleus | 28.94 | 28.37 |
| CDX85167 | Canola | nucleus | 31.52 | 28.28 |
| CDY41479 | Canola | nucleus | 22.92 | 27.97 |
| CDX92996 | Canola | nucleus | 32.09 | 27.65 |
| CDY51710 | Canola | nucleus | 24.36 | 27.33 |
| CDX94841 | Canola | nucleus | 31.81 | 27.21 |
| CDY03201 | Canola | cytosol | 14.04 | 27.07 |
| CDX91680 | Canola | nucleus | 22.06 | 26.92 |
| CDY07143 | Canola | nucleus | 23.78 | 26.77 |
| CDY21365 | Canola | nucleus | 22.35 | 25.91 |
| CDY04811 | Canola | nucleus | 22.35 | 25.91 |
| CDY12528 | Canola | nucleus | 20.92 | 25.89 |
| CDY46652 | Canola | nucleus | 20.92 | 25.89 |
| CDY11386 | Canola | nucleus | 20.63 | 25.81 |
| CDY18083 | Canola | nucleus | 27.79 | 25.26 |
| CDY37820 | Canola | nucleus | 15.76 | 25.23 |
| CDY64587 | Canola | nucleus | 26.36 | 24.8 |
| CDY35175 | Canola | nucleus | 20.63 | 24.49 |
| CDX72877 | Canola | nucleus | 22.64 | 24.09 |
| CDX82171 | Canola | nucleus | 22.35 | 23.93 |
| CDY03650 | Canola | nucleus | 22.35 | 23.93 |
| CDY33966 | Canola | nucleus | 20.63 | 23.84 |
| CDX77682 | Canola | nucleus | 22.06 | 23.77 |
| CDX68274 | Canola | nucleus | 22.06 | 23.77 |
| CDY63053 | Canola | nucleus | 22.06 | 23.77 |
| CDY50447 | Canola | nucleus | 22.06 | 23.77 |
| CDX96382 | Canola | nucleus | 22.06 | 23.69 |
| CDX80049 | Canola | nucleus | 20.92 | 23.32 |
| CDY41561 | Canola | nucleus | 20.63 | 23.08 |
| CDY65719 | Canola | nucleus | 19.48 | 22.59 |
| CDY27521 | Canola | nucleus | 20.06 | 22.58 |
| CDX76598 | Canola | nucleus | 20.34 | 22.54 |
| CDY41734 | Canola | nucleus | 19.2 | 22.26 |
| CDY48013 | Canola | nucleus | 20.06 | 22.01 |
| CDY68483 | Canola | nucleus | 20.06 | 21.88 |
| CDY55926 | Canola | nucleus | 20.06 | 21.67 |
| CDY55929 | Canola | nucleus | 18.05 | 18.86 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078ICL1 | UniProt:A0A078ICL1 | EnsemblPlants:CDY47059 | ProteinID:CDY47059 |
| ProteinID:CDY47059.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00086672001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEF681 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g12390DBnaA03g12390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICL1]
Coordinates
chrLK032696:-:5257..7274
Molecular Weight (calculated)
38294.5 Da
IEP (calculated)
5.069
GRAVY (calculated)
-0.438
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDFLEECEF VDTSLAEDDL FAILESLEGA GEISPTAAST PKDGATSSKE LVTDPNYETP SPKKKRKRLE TEKEDEEEED GEEEENKQQK MSHVTVERNR
101: RKQMNEHLTV LRSLMPCFYV KRGDQASIIG GVVEYISELQ QVLQSLEAKK QRKTYAEVLS PRLVPSPRPS PPVLSPRKPP LSPRISHHHL LLPPISPRTP
201: QPTSPYLAHA PKLPLIPQPP LRSYSSLAGG SSLGDPPPYS PASSSSSPSV SSIRESSVIN ELVANSKSAL ADVEVKFSGA NVLLKTVSHK IPGQVLKIIA
301: ALEDLALEIL QVNINTADET MLNSFTIKIG IECQLSAEEL AQQIQQTFC
101: RKQMNEHLTV LRSLMPCFYV KRGDQASIIG GVVEYISELQ QVLQSLEAKK QRKTYAEVLS PRLVPSPRPS PPVLSPRKPP LSPRISHHHL LLPPISPRTP
201: QPTSPYLAHA PKLPLIPQPP LRSYSSLAGG SSLGDPPPYS PASSSSSPSV SSIRESSVIN ELVANSKSAL ADVEVKFSGA NVLLKTVSHK IPGQVLKIIA
301: ALEDLALEIL QVNINTADET MLNSFTIKIG IECQLSAEEL AQQIQQTFC
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.