Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g007410.2.1 | Tomato | nucleus | 87.04 | 92.52 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 61.13 | 64.2 |
| KRH64504 | Soybean | nucleus | 61.69 | 63.66 |
| KRH18131 | Soybean | nucleus | 59.72 | 63.1 |
| KRH53438 | Soybean | nucleus | 61.41 | 62.46 |
| KRH16521 | Soybean | nucleus | 56.62 | 60.73 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 46.48 | 58.3 |
| GSMUA_Achr10P... | Banana | nucleus | 42.54 | 57.85 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 49.86 | 56.91 |
| CDY47059 | Canola | nucleus | 55.77 | 56.73 |
| CDY38734 | Canola | nucleus | 55.49 | 55.81 |
| AT5G53210.1 | Thale cress | nucleus | 56.62 | 55.22 |
| CDY14397 | Canola | nucleus | 54.37 | 54.37 |
| CDY19692 | Canola | nucleus | 53.52 | 53.82 |
| Bra029088.1-P | Field mustard | nucleus | 50.14 | 52.98 |
| Bra022638.1-P | Field mustard | nucleus | 49.58 | 50.29 |
| CDX96201 | Canola | nucleus | 49.86 | 50.28 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 49.3 | 48.08 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 49.3 | 48.08 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 49.3 | 47.95 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 49.01 | 47.8 |
| EER88428 | Sorghum | nucleus | 48.17 | 45.0 |
| Zm00001d046096_P001 | Maize | nucleus | 43.38 | 44.51 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 46.2 | 43.73 |
| EES06610 | Sorghum | nucleus | 48.73 | 43.47 |
| Zm00001d016095_P001 | Maize | nucleus | 47.04 | 42.49 |
| Bra003073.1-P | Field mustard | nucleus | 50.14 | 41.11 |
| Os02t0257500-00 | Rice | nucleus | 46.76 | 40.0 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 43.66 | 39.24 |
| PGSC0003DMT400076223 | Potato | nucleus | 25.35 | 31.58 |
| PGSC0003DMT400040761 | Potato | nucleus | 30.42 | 27.69 |
| PGSC0003DMT400045820 | Potato | nucleus | 21.13 | 25.34 |
| PGSC0003DMT400005446 | Potato | nucleus | 23.66 | 24.35 |
| PGSC0003DMT400045210 | Potato | nucleus | 21.41 | 23.03 |
| PGSC0003DMT400041644 | Potato | nucleus | 15.21 | 22.78 |
| PGSC0003DMT400073574 | Potato | nucleus | 20.85 | 21.96 |
Protein Annotations
| EntrezGene:102604858 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009791 | GO:GO:0010374 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | UniProt:M1AIH0 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400009101 | PGSC:PGSC0003DMG400009101 | EnsemblPlants:PGSC0003DMT400023497 |
| PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002949DA2 |
| RefSeq:XP_006350638.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009101]
Coordinates
chr3:+:48902513..48905370
Molecular Weight (calculated)
38303.3 Da
IEP (calculated)
6.263
GRAVY (calculated)
-0.411
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDQSLSDL FEDSECDIFS ILEALEGGGG GGGGGGSSSI NSEFYNNTNN QTTTTTTTTT SDEITGLVSE EGRKRKLVSQ KSTGSSATLQ EEETHEADTP
101: SSKRQNLAAV ISGGIENKIS HITVERNRRK QMNDHLSVLR TLMPCFYAKR GDQASIIGGV VDYINELQQV LQSLEAKKQR KVYSEVLSPR VLPPQLVPIS
201: PRLITPSPLS PRKPPLSPRM NLPISPRTPQ PTSPYKPNNI NNKANKPLEP SPTTSSNSSI DSHVNNELAA NSKSAIADVE VKFSGANVIL KTVSPRIPGQ
301: AVKIIAALEQ LALEILHVSI STIDGTMLNS FTIKIGIECQ LSAEELAHQI QQTFC
101: SSKRQNLAAV ISGGIENKIS HITVERNRRK QMNDHLSVLR TLMPCFYAKR GDQASIIGGV VDYINELQQV LQSLEAKKQR KVYSEVLSPR VLPPQLVPIS
201: PRLITPSPLS PRKPPLSPRM NLPISPRTPQ PTSPYKPNNI NNKANKPLEP SPTTSSNSSI DSHVNNELAA NSKSAIADVE VKFSGANVIL KTVSPRIPGQ
301: AVKIIAALEQ LALEILHVSI STIDGTMLNS FTIKIGIECQ LSAEELAHQI QQTFC
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.