Factsheet for PGSC0003DMT400076223

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091760.1.1	Tomato	nucleus	83.16	95.95
GSMUA_Achr8P28400_001	Banana	nucleus	40.7	58.29
GSMUA_Achr2P06030_001	Banana	nucleus	51.23	45.77
PGSC0003DMT400040761	Potato	nucleus	60.7	44.36
Os05t0586300-00	Rice	nucleus	47.72	35.14
Zm00001d009715_P001	Maize	nucleus	48.77	33.25
TraesCS1B01G300100.1	Wheat	nucleus	46.67	31.89
TraesCS1D01G289400.1	Wheat	nucleus	46.67	31.74
TraesCS1A01G290800.1	Wheat	nucleus	45.96	31.19
KXG22636	Sorghum	nucleus	49.47	30.85
PGSC0003DMT400005446	Potato	nucleus	36.14	29.86
HORVU1Hr1G071330.3	Barley	nucleus	45.61	29.82
PGSC0003DMT400045210	Potato	nucleus	34.39	29.7
PGSC0003DMT400041644	Potato	nucleus	24.21	29.11
PGSC0003DMT400045820	Potato	nucleus	29.82	28.72
PGSC0003DMT400073574	Potato	nucleus	31.23	26.41
PGSC0003DMT400023497	Potato	nucleus	31.58	25.35

Protein Annotations

EnsemblPlants:PGSC0003DMT400076223	EnsemblPlantsGene:PGSC0003DMG400029634	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR11514
PANTHER:PTHR11514:SF61	PFAM:PF00010	PFscan:PS50888	PGSC:PGSC0003DMG400029634	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	SUPFAM:SSF55021	UniParc:UPI0002957543	UniProt:M1CWE1	MapMan:15.5.32	:

Description

Transcription factor FAMA [Source:PGSC_GENE;Acc:PGSC0003DMG400029634]

Coordinates

chr9:+:58673057..58675515

Molecular Weight (calculated)

32952.3 Da

IEP (calculated)

6.719

GRAVY (calculated)

-0.632

Length

285 amino acids

Sequence
(BLAST)

001: MEKKEKKQPS LPTIFPSLND DNYYSLDDDS YNCHNYQHPQ MVNYNEEEKA LMVSQKEEEI NVTFVGENSK ANESKKKRKR TKIRMKSSEE VENQRMTHIE
101: VERNRRKQMN EHLHVLRSLM PSSYVQRGDQ ASIVGGAIEF VRELEQLLQC LESQKRRKLY GDHQDSSLME IQNPSNLVFA PNNNEIGIIQ EDIAEIKSCL
201: ADVEVKIIGI DNAMIKILSK RRPGQLINTI SALQDLQLNI IHTNVTTIEH TVLYTFNVKI CGETRFSADN IANLVQQIFS FFSCK

Best Arabidopsis Sequence Match ( AT3G24140.2 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.