Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g074810.2.1 | Tomato | extracellular | 93.04 | 90.42 |
| Bra040856.1-P | Field mustard | nucleus | 38.55 | 61.29 |
| CDY37634 | Canola | nucleus | 40.29 | 60.96 |
| PGSC0003DMT400045820 | Potato | nucleus | 49.57 | 57.77 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 50.43 | 56.13 |
| KRH16792 | Soybean | nucleus | 48.99 | 52.16 |
| CDY41479 | Canola | nucleus | 43.19 | 52.1 |
| KRH62289 | Soybean | nucleus | 48.41 | 51.54 |
| CDX91680 | Canola | nucleus | 42.61 | 51.4 |
| KRH53000 | Soybean | nucleus | 48.99 | 50.6 |
| AT1G72210.1 | Thale cress | nucleus | 46.67 | 50.31 |
| Bra016377.1-P | Field mustard | nucleus | 43.48 | 49.67 |
| Bra016080.1-P | Field mustard | nucleus | 46.67 | 49.54 |
| CDY21365 | Canola | nucleus | 43.19 | 49.5 |
| CDY04811 | Canola | nucleus | 43.19 | 49.5 |
| CDY50447 | Canola | nucleus | 46.09 | 49.07 |
| CDX68274 | Canola | nucleus | 46.09 | 49.07 |
| Bra003886.1-P | Field mustard | nucleus | 46.09 | 49.07 |
| CDX96382 | Canola | nucleus | 46.09 | 48.92 |
| CDX72877 | Canola | nucleus | 46.09 | 48.48 |
| KRH72411 | Soybean | nucleus | 48.41 | 48.27 |
| PGSC0003DMT400041644 | Potato | nucleus | 33.04 | 48.1 |
| Bra012329.1-P | Field mustard | nucleus | 42.03 | 47.85 |
| Bra008017.1-P | Field mustard | nucleus | 44.64 | 47.24 |
| CDY03650 | Canola | nucleus | 44.35 | 46.93 |
| CDX82171 | Canola | nucleus | 44.06 | 46.63 |
| CDY12528 | Canola | nucleus | 37.97 | 46.45 |
| CDY46652 | Canola | nucleus | 37.39 | 45.74 |
| PGSC0003DMT400045210 | Potato | nucleus | 41.16 | 43.03 |
| AT1G22490.2 | Thale cress | nucleus | 38.84 | 41.1 |
| PGSC0003DMT400073574 | Potato | nucleus | 39.71 | 40.65 |
| PGSC0003DMT400076223 | Potato | nucleus | 29.86 | 36.14 |
| PGSC0003DMT400040761 | Potato | nucleus | 32.17 | 28.46 |
| PGSC0003DMT400023497 | Potato | nucleus | 24.35 | 23.66 |
Protein Annotations
| EntrezGene:102594599 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0ZPW7 |
| PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400002125 | PGSC:PGSC0003DMG400002125 | EnsemblPlants:PGSC0003DMT400005446 | PFscan:PS50888 | PANTHER:PTHR11969 |
| PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002952645 | RefSeq:XP_006338108.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002125]
Coordinates
chr4:-:64349619..64352671
Molecular Weight (calculated)
38528.1 Da
IEP (calculated)
6.237
GRAVY (calculated)
-0.550
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MALETVIYNQ ETFGYCCKEY YNNNLGNVNY NYELDLSQGE GGAGEMSFTN LLDHNNREES SSSPPELMYN YNAREYNIWD PNSSIEDHQL FIEGSPAAEI
101: PAAAVRSAAT SGRRKRRRTR SCKNKEELEN QRMTHIAVER NRRKQMNEYL AVIRSLMPPS YVQRGDQASI IGGAINFVKE LEHHLQTLEA QKRSHSQKQE
201: HSDNHGSSSS PLFADYFAFP QYSTHFKSTS PAAPASTAAV GSCDSPLATE KMSALADIEV SMAESHANLK ILSKRRPKQL LKIVAGLQCL WLTVLHLNVT
301: TVDHMVLYSL SLKVEEGCQL TTADEIADSV NQLLGRIQEE AASSS
101: PAAAVRSAAT SGRRKRRRTR SCKNKEELEN QRMTHIAVER NRRKQMNEYL AVIRSLMPPS YVQRGDQASI IGGAINFVKE LEHHLQTLEA QKRSHSQKQE
201: HSDNHGSSSS PLFADYFAFP QYSTHFKSTS PAAPASTAAV GSCDSPLATE KMSALADIEV SMAESHANLK ILSKRRPKQL LKIVAGLQCL WLTVLHLNVT
301: TVDHMVLYSL SLKVEEGCQL TTADEIADSV NQLLGRIQEE AASSS
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.