Factsheet for AT1G72210.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37634	Canola	nucleus	61.25	85.96
CDX72877	Canola	nucleus	83.75	81.71
CDX96382	Canola	nucleus	81.88	80.62
CDX68274	Canola	nucleus	81.56	80.56
Bra016080.1-P	Field mustard	nucleus	81.56	80.31
CDY50447	Canola	nucleus	81.25	80.25
Bra003886.1-P	Field mustard	nucleus	81.25	80.25
CDX82171	Canola	nucleus	78.12	76.69
CDY03650	Canola	nucleus	77.19	75.77
Bra008017.1-P	Field mustard	nucleus	77.19	75.77
AT1G22490.2	Thale cress	nucleus	57.81	56.75
VIT_18s0001g06650.t01	Wine grape	nucleus	54.06	55.81
KRH62289	Soybean	nucleus	53.12	52.47
KRH16792	Soybean	nucleus	52.81	52.16
Solyc12g087850.1.1	Tomato	nucleus	25.94	51.23
KRH53000	Soybean	nucleus	53.12	50.9
KRH72411	Soybean	nucleus	52.5	48.55
PGSC0003DMT400005446	Potato	nucleus	50.31	46.67
Solyc04g074810.2.1	Tomato	extracellular	50.0	45.07
PGSC0003DMT400045820	Potato	nucleus	41.25	44.59
AT5G46690.1	Thale cress	nucleus	37.5	36.7
AT5G65320.1	Thale cress	nucleus	33.75	36.49
AT4G01460.2	Thale cress	nucleus	33.75	34.29
AT3G06120.1	Thale cress	nucleus	19.06	30.2
AT3G61950.1	Thale cress	nucleus	32.81	29.33
AT2G46810.1	Thale cress	nucleus	30.31	26.15
AT3G24140.1	Thale cress	nucleus	31.88	24.64
AT5G53210.1	Thale cress	nucleus	24.69	21.7

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:843553	ProteinID:AAG51804.1	InterPro:ACT_dom	ProteinID:AEE35289.1
EMBL:AJ459771	ArrayExpress:AT1G72210	EnsemblPlantsGene:AT1G72210	RefSeq:AT1G72210	TAIR:AT1G72210	RefSeq:AT1G72210-TAIR-G
EnsemblPlants:AT1G72210.1	TAIR:AT1G72210.1	EMBL:BT003871	EMBL:BT006086	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638	RefSeq:NP_177366.1	PFAM:PF00010	PO:PO:0000293
PFscan:PS50888	PFscan:PS51671	PANTHER:PTHR11969	PANTHER:PTHR11969:SF26	UniProt:Q9C7T4	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000000C1B3	InterPro:bHLH_dom	SEG:seg	:	:

Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]

Coordinates

chr1:+:27179458..27182456

Molecular Weight (calculated)

35973.8 Da

IEP (calculated)

5.139

GRAVY (calculated)

-0.752

Length

320 amino acids

Sequence
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.