Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045820 | Potato | nucleus | 80.25 | 43.92 |
| Bra040856.1-P | Field mustard | nucleus | 48.15 | 35.94 |
| CDY37634 | Canola | nucleus | 50.0 | 35.53 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 55.56 | 29.03 |
| Solyc04g074810.2.1 | Tomato | extracellular | 63.58 | 29.01 |
| CDY41479 | Canola | nucleus | 50.62 | 28.67 |
| Solyc01g080050.2.1 | Tomato | nucleus | 33.95 | 28.21 |
| CDX91680 | Canola | nucleus | 48.77 | 27.62 |
| KRH16792 | Soybean | nucleus | 54.32 | 27.16 |
| Bra016377.1-P | Field mustard | nucleus | 50.62 | 27.15 |
| CDY04811 | Canola | nucleus | 50.0 | 26.91 |
| KRH62289 | Soybean | nucleus | 53.7 | 26.85 |
| CDY21365 | Canola | nucleus | 49.38 | 26.58 |
| Bra012329.1-P | Field mustard | nucleus | 48.77 | 26.07 |
| KRH53000 | Soybean | nucleus | 53.7 | 26.05 |
| AT1G72210.1 | Thale cress | nucleus | 51.23 | 25.94 |
| Solyc09g091760.1.1 | Tomato | nucleus | 39.51 | 25.91 |
| CDX68274 | Canola | nucleus | 51.23 | 25.62 |
| Bra003886.1-P | Field mustard | nucleus | 51.23 | 25.62 |
| Bra016080.1-P | Field mustard | nucleus | 51.23 | 25.54 |
| CDX96382 | Canola | nucleus | 51.23 | 25.54 |
| Solyc11g010340.1.1 | Tomato | nucleus | 46.91 | 25.5 |
| KRH72411 | Soybean | nucleus | 54.32 | 25.43 |
| CDY50447 | Canola | nucleus | 50.62 | 25.31 |
| CDX72877 | Canola | nucleus | 50.62 | 25.0 |
| Bra008017.1-P | Field mustard | nucleus | 49.38 | 24.54 |
| CDY03650 | Canola | nucleus | 48.77 | 24.23 |
| CDX82171 | Canola | nucleus | 48.77 | 24.23 |
| Solyc08g076820.2.1 | Tomato | nucleus | 47.53 | 23.48 |
| CDY12528 | Canola | nucleus | 40.12 | 23.05 |
| CDY46652 | Canola | nucleus | 39.51 | 22.7 |
| Solyc01g098720.2.1 | Tomato | nucleus | 45.06 | 22.26 |
| AT1G22490.2 | Thale cress | nucleus | 41.36 | 20.55 |
| Solyc05g053660.1.1 | Tomato | nucleus | 40.74 | 17.23 |
| Solyc03g007410.2.1 | Tomato | nucleus | 32.1 | 15.57 |
Protein Annotations
| EnsemblPlants:Solyc12g087850.1.1 | EnsemblPlantsGene:Solyc12g087850.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000276A83C | UniProt:K4DGK6 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr12:-:63349425..63351666
Molecular Weight (calculated)
18384.3 Da
IEP (calculated)
7.930
GRAVY (calculated)
-0.333
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHEEKENKD ERMIHIAMKR NQRKQMNNYL TLLQSLISSS HVQRADQASI IGGAINFVKE LEHNLQTLRS NCSSELSRGS CQPQILTKRR PKQLMNIVVG
101: LQCLWLTILH LNVTTIHNQI VLCSISAKLE EGCQLTTIEE ISHAVNQLLG RIQEEEATSS SN
101: LQCLWLTILH LNVTTIHNQI VLCSISAKLE EGCQLTTIEE ISHAVNQLLG RIQEEEATSS SN
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.