Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46652 | Canola | nucleus | 93.62 | 93.62 |
| Bra012329.1-P | Field mustard | nucleus | 94.33 | 87.79 |
| CDY41479 | Canola | nucleus | 78.37 | 77.27 |
| CDX91680 | Canola | nucleus | 78.37 | 77.27 |
| CDY04811 | Canola | nucleus | 80.85 | 75.75 |
| CDY21365 | Canola | nucleus | 80.14 | 75.08 |
| AT1G22490.2 | Thale cress | nucleus | 79.43 | 68.71 |
| CDY37634 | Canola | nucleus | 47.87 | 59.21 |
| CDX96382 | Canola | nucleus | 63.12 | 54.77 |
| CDX72877 | Canola | nucleus | 62.77 | 53.96 |
| CDY50447 | Canola | nucleus | 61.7 | 53.7 |
| CDX68274 | Canola | nucleus | 61.35 | 53.4 |
| CDY03650 | Canola | nucleus | 60.28 | 52.15 |
| CDX82171 | Canola | nucleus | 59.93 | 51.84 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 51.06 | 46.45 |
| KRH62289 | Soybean | nucleus | 51.06 | 44.44 |
| KRH16792 | Soybean | nucleus | 49.65 | 43.21 |
| KRH53000 | Soybean | nucleus | 50.71 | 42.81 |
| KRH72411 | Soybean | nucleus | 50.35 | 41.04 |
| Solyc12g087850.1.1 | Tomato | nucleus | 23.05 | 40.12 |
| PGSC0003DMT400005446 | Potato | nucleus | 46.45 | 37.97 |
| CDY03201 | Canola | cytosol | 24.11 | 37.57 |
| Solyc04g074810.2.1 | Tomato | extracellular | 46.45 | 36.9 |
| PGSC0003DMT400045820 | Potato | nucleus | 36.88 | 35.14 |
| CDY65719 | Canola | nucleus | 37.23 | 34.88 |
| CDY41734 | Canola | nucleus | 37.23 | 34.88 |
| CDY37820 | Canola | nucleus | 25.89 | 33.49 |
| CDY35175 | Canola | nucleus | 34.75 | 33.33 |
| CDY63053 | Canola | nucleus | 36.88 | 32.1 |
| CDY33966 | Canola | nucleus | 34.04 | 31.79 |
| CDX77682 | Canola | nucleus | 36.17 | 31.48 |
| CDY11386 | Canola | nucleus | 30.85 | 31.18 |
| CDY51710 | Canola | nucleus | 32.98 | 29.9 |
| CDY07143 | Canola | nucleus | 31.91 | 29.03 |
| CDY41561 | Canola | nucleus | 31.91 | 28.85 |
| CDX80049 | Canola | nucleus | 31.21 | 28.11 |
| CDY48013 | Canola | nucleus | 31.21 | 27.67 |
| CDY68483 | Canola | nucleus | 31.21 | 27.5 |
| CDY27521 | Canola | nucleus | 30.14 | 27.42 |
| CDX76598 | Canola | nucleus | 30.14 | 26.98 |
| CDY55926 | Canola | nucleus | 30.85 | 26.93 |
| CDY24717 | Canola | nucleus | 18.09 | 25.37 |
| CDY18843 | Canola | nucleus | 18.09 | 25.37 |
| CDY58338 | Canola | nucleus | 18.44 | 25.12 |
| CDY08066 | Canola | nucleus | 18.44 | 25.12 |
| CDY05233 | Canola | nucleus | 17.73 | 24.51 |
| CDY55929 | Canola | nucleus | 28.72 | 24.25 |
| CDX77460 | Canola | nucleus | 29.79 | 23.6 |
| CDX85167 | Canola | nucleus | 31.91 | 23.14 |
| CDX92996 | Canola | nucleus | 32.27 | 22.47 |
| CDX94841 | Canola | nucleus | 31.56 | 21.81 |
| CDY18083 | Canola | nucleus | 29.08 | 21.35 |
| CDY19692 | Canola | nucleus | 26.24 | 20.96 |
| CDY47059 | Canola | nucleus | 25.89 | 20.92 |
| CDY14397 | Canola | nucleus | 26.24 | 20.85 |
| CDY64587 | Canola | nucleus | 27.3 | 20.75 |
| CDX96201 | Canola | nucleus | 25.53 | 20.45 |
| CDY38734 | Canola | nucleus | 25.53 | 20.4 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078FK94 | UniProt:A0A078FK94 | EnsemblPlants:CDY12528 | ProteinID:CDY12528 |
| ProteinID:CDY12528.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00061885001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 |
| PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE4C69 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC07g13680DBnaC07g13680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK94]
Coordinates
chrLK032023:+:814355..816098
Molecular Weight (calculated)
32690.7 Da
IEP (calculated)
7.012
GRAVY (calculated)
-0.709
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLEAVVNPQ DPFGYLSNCK DFMFHDFYYQ EEIVSQDTKN NIHKLGHEQR FVENDKEEER QWGDHYHHQC PVVPSLEEEL DLPAIDVENH PPVQQRRKRR
101: RTRSNKNKEE IENQRMTHIA VERNRRKQMN EYLAVLRSLM PSSYAQRGDQ ASIVGGAINY VKKLEHILQS MEPRRTTTTS HEADTSTSSL VFTFSDFFTF
201: PQYSKKSLSE VESSSSPAEI EVTVAEGHAN VKIMAKKKPR QLLKLVASIQ SLRLSLLHLN VTTLDNLILY SISVKNNHEI LE
101: RTRSNKNKEE IENQRMTHIA VERNRRKQMN EYLAVLRSLM PSSYAQRGDQ ASIVGGAINY VKKLEHILQS MEPRRTTTTS HEADTSTSSL VFTFSDFFTF
201: PQYSKKSLSE VESSSSPAEI EVTVAEGHAN VKIMAKKKPR QLLKLVASIQ SLRLSLLHLN VTTLDNLILY SISVKNNHEI LE
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.