Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008017.1-P | Field mustard | nucleus | 99.39 | 99.39 |
| CDX82171 | Canola | nucleus | 96.32 | 96.32 |
| CDY37634 | Canola | nucleus | 56.44 | 80.7 |
| CDY50447 | Canola | nucleus | 78.83 | 79.32 |
| CDX68274 | Canola | nucleus | 78.53 | 79.01 |
| AT1G72210.1 | Thale cress | nucleus | 75.77 | 77.19 |
| CDX96382 | Canola | nucleus | 76.38 | 76.62 |
| CDX72877 | Canola | nucleus | 76.69 | 76.22 |
| CDY41479 | Canola | nucleus | 54.91 | 62.59 |
| CDX91680 | Canola | nucleus | 53.99 | 61.54 |
| CDY04811 | Canola | nucleus | 56.44 | 61.13 |
| CDY21365 | Canola | nucleus | 56.13 | 60.8 |
| CDY12528 | Canola | nucleus | 52.15 | 60.28 |
| CDY46652 | Canola | nucleus | 50.92 | 58.87 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 51.23 | 53.87 |
| Solyc12g087850.1.1 | Tomato | nucleus | 24.23 | 48.77 |
| KRH62289 | Soybean | nucleus | 47.85 | 48.15 |
| KRH16792 | Soybean | nucleus | 47.24 | 47.53 |
| KRH53000 | Soybean | nucleus | 47.85 | 46.71 |
| KRH72411 | Soybean | nucleus | 47.55 | 44.8 |
| PGSC0003DMT400005446 | Potato | nucleus | 46.93 | 44.35 |
| PGSC0003DMT400045820 | Potato | nucleus | 38.96 | 42.91 |
| Solyc04g074810.2.1 | Tomato | extracellular | 46.63 | 42.82 |
| CDY65719 | Canola | nucleus | 35.28 | 38.21 |
| CDY41734 | Canola | nucleus | 34.97 | 37.87 |
| CDY37820 | Canola | nucleus | 24.54 | 36.7 |
| CDY03201 | Canola | cytosol | 19.94 | 35.91 |
| CDY63053 | Canola | nucleus | 34.97 | 35.19 |
| CDX77682 | Canola | nucleus | 34.66 | 34.88 |
| CDY11386 | Canola | nucleus | 28.53 | 33.33 |
| CDY33966 | Canola | nucleus | 30.67 | 33.11 |
| CDY35175 | Canola | nucleus | 29.75 | 32.99 |
| CDY51710 | Canola | nucleus | 30.67 | 32.15 |
| CDY07143 | Canola | nucleus | 29.75 | 31.29 |
| CDY41561 | Canola | nucleus | 28.83 | 30.13 |
| CDY48013 | Canola | nucleus | 29.14 | 29.87 |
| CDX80049 | Canola | nucleus | 28.53 | 29.71 |
| CDX76598 | Canola | nucleus | 28.53 | 29.52 |
| CDY27521 | Canola | nucleus | 27.3 | 28.71 |
| CDY68483 | Canola | nucleus | 27.91 | 28.44 |
| CDY24717 | Canola | nucleus | 17.18 | 27.86 |
| CDY55926 | Canola | nucleus | 27.3 | 27.55 |
| CDY08066 | Canola | nucleus | 17.18 | 27.05 |
| CDY58338 | Canola | nucleus | 17.18 | 27.05 |
| CDY05233 | Canola | nucleus | 16.87 | 26.96 |
| CDY18843 | Canola | nucleus | 16.26 | 26.37 |
| CDY55929 | Canola | nucleus | 25.15 | 24.55 |
| CDX85167 | Canola | nucleus | 29.14 | 24.42 |
| CDX77460 | Canola | nucleus | 26.07 | 23.88 |
| CDX92996 | Canola | nucleus | 29.14 | 23.46 |
| CDX94841 | Canola | nucleus | 28.53 | 22.79 |
| CDY19692 | Canola | nucleus | 24.23 | 22.38 |
| CDY47059 | Canola | nucleus | 23.93 | 22.35 |
| CDY14397 | Canola | nucleus | 24.23 | 22.25 |
| CDY18083 | Canola | nucleus | 25.77 | 21.88 |
| CDY38734 | Canola | nucleus | 23.62 | 21.81 |
| CDY64587 | Canola | nucleus | 24.23 | 21.29 |
| CDX96201 | Canola | nucleus | 21.78 | 20.17 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078ENY1 | InterPro:ACT_dom | EnsemblPlants:CDY03650 | ProteinID:CDY03650 |
| ProteinID:CDY03650.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00116433001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR002912 | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PFscan:PS51671 | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0004EF466C | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
BnaA02g15870D
Coordinates
chrLK031945:-:184748..187012
Molecular Weight (calculated)
36664.0 Da
IEP (calculated)
5.464
GRAVY (calculated)
-0.665
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAVVYPQ DPFSLISCKD IQFHDFYFQQ EDNQDPLDTK NNIKLGQEQR QGLPRINYNG KSVDTFTNDD YNYNDQEEDL RWPRDDHLYG SALDQPPPSD
101: VAAGGGRRKR RRRTKSSKNK EEIENQRMTH IAVEKNRRKQ MNDYLAVLRS LMPPSYAQRG DQASIVGGAI NYLKELEHHL QSIEPPLKST TVPVDTESAS
201: PAADQINTIA ASSLGQFSEF FAFPQYSSRP SSSSVAEGMA EIEVTMVESH ASVKILAKKR PKQLLKLAAS IQNLKLTVLH LNVTTCDDSV LYSISLKVEE
301: GSQLNTVEDI AAGMNQILRR IEEESS
101: VAAGGGRRKR RRRTKSSKNK EEIENQRMTH IAVEKNRRKQ MNDYLAVLRS LMPPSYAQRG DQASIVGGAI NYLKELEHHL QSIEPPLKST TVPVDTESAS
201: PAADQINTIA ASSLGQFSEF FAFPQYSSRP SSSSVAEGMA EIEVTMVESH ASVKILAKKR PKQLLKLAAS IQNLKLTVLH LNVTTCDDSV LYSISLKVEE
301: GSQLNTVEDI AAGMNQILRR IEEESS
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.