Factsheet for Bra008017.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03650	Canola	nucleus	99.39	99.39
CDX82171	Canola	nucleus	96.32	96.32
Bra003886.1-P	Field mustard	nucleus	78.53	79.01
AT1G72210.1	Thale cress	nucleus	75.77	77.19
Bra016080.1-P	Field mustard	nucleus	76.07	76.31
Bra040856.1-P	Field mustard	nucleus	46.01	69.12
Bra016377.1-P	Field mustard	nucleus	58.28	62.91
Bra012329.1-P	Field mustard	nucleus	57.67	62.05
VIT_18s0001g06650.t01	Wine grape	nucleus	51.23	53.87
Solyc12g087850.1.1	Tomato	nucleus	24.54	49.38
KRH62289	Soybean	nucleus	48.16	48.46
KRH16792	Soybean	nucleus	47.55	47.84
KRH53000	Soybean	nucleus	48.16	47.01
KRH72411	Soybean	nucleus	47.85	45.09
PGSC0003DMT400005446	Potato	nucleus	47.24	44.64
PGSC0003DMT400045820	Potato	nucleus	39.26	43.24
Solyc04g074810.2.1	Tomato	extracellular	46.93	43.1
Bra027958.1-P	Field mustard	nucleus	34.36	38.36
Bra025007.1-P	Field mustard	nucleus	31.29	37.23
Bra031865.1-P	Field mustard	nucleus	24.23	36.24
Bra004505.1-P	Field mustard	nucleus	29.14	35.06
Bra017533.1-P	Field mustard	nucleus	30.37	34.26
Bra007644.1-P	Field mustard	nucleus	28.83	33.69
Bra037414.1-P	Field mustard	nucleus	30.98	32.48
Bra040483.1-P	Field mustard	nucleus	29.45	30.19
Bra020775.1-P	Field mustard	nucleus	17.48	28.36
Bra001183.1-P	Field mustard	nucleus	17.48	27.54
Bra040234.1-P	Field mustard	nucleus	16.56	26.87
Bra028357.1-P	Field mustard	nucleus	29.75	24.25
Bra001929.1-P	Field mustard	nucleus	29.45	23.7
Bra028351.1-P	Field mustard	nucleus	25.46	23.06
Bra029088.1-P	Field mustard	nucleus	23.01	22.32
Bra022638.1-P	Field mustard	nucleus	21.47	20.0
Bra003073.1-P	Field mustard	nucleus	23.62	17.78

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	InterPro:ACT_dom	EnsemblPlantsGene:Bra008017	EnsemblPlants:Bra008017.1	EnsemblPlants:Bra008017.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4CUX2	PFAM:PF00010	PFscan:PS50888	PFscan:PS51671
PANTHER:PTHR11969	PANTHER:PTHR11969:SF26	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002546FEB	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT1G72210 (E=2e-121) | basic helix-loop-helix (bHLH) family protein (bHLH096)

Coordinates

chrA02:+:12568528..12570679

Molecular Weight (calculated)

36660.0 Da

IEP (calculated)

5.464

GRAVY (calculated)

-0.660

Length

326 amino acids

Sequence
(BLAST)

001: MALEAVVYPQ DPFSLISCKD IQFHDFYFQQ EDNQDPLDTK NNIKLGQEQR QGLPRINYNG KSVDTFTNDD YNYNDQEEDL RWPRDDHLYG SALDQPPPSD
101: VAAGGGRRKR RRRTKSSKNK EEIENQRMTH IAVERNRRKQ MNDYLAVLRS LMPPSYAQRG DQASIVGGAI NYLKELEHHL QSIEPPLKST TVPVDTESAS
201: PAADQINTIA ASSLGQFSEF FAFPQYSSRP SSSSVAEGVA EIEVTMVESH ASVKILAKKR PKQLLKLAAS IQNLKLTVLH LNVTTCDDSV LYSISLKVEE
301: GSQLNTVEDI AAGMNQILRR IEEESS

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.