Skip to main content
crop-pal logo
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY47059 Canola nucleus 97.62 93.98
CDY38734 Canola nucleus 95.83 91.22
Bra022638.1-P Field mustard nucleus 87.2 83.71
AT5G53210.1 Thale cress nucleus 88.99 82.14
Bra003073.1-P Field mustard nucleus 85.71 66.51
GSMUA_Achr10P... Banana nucleus 44.64 57.47
KRH53438 Soybean nucleus 58.93 56.73
KRH64504 Soybean nucleus 58.04 56.69
KRH18131 Soybean nucleus 56.55 56.55
VIT_16s0050g02500.t01 Wine grape nucleus 56.25 55.92
KRH16521 Soybean nucleus 53.57 54.38
GSMUA_Achr5P06780_001 Banana cytosol 43.75 51.94
Solyc03g007410.2.1 Tomato nucleus 51.49 51.8
GSMUA_Achr8P19870_001 Banana cytosol, golgi, nucleus 46.73 50.48
PGSC0003DMT400023497 Potato nucleus 52.98 50.14
TraesCS7B01G232000.1 Wheat cytosol 47.02 43.41
TraesCS7A01G350900.1 Wheat nucleus 46.73 43.13
HORVU7Hr1G079250.1 Barley cytosol 46.73 43.01
TraesCS7D01G327900.1 Wheat nucleus 46.43 42.86
Zm00001d046096_P001 Maize nucleus 44.05 42.77
Bra020775.1-P Field mustard nucleus 25.3 42.29
Bra001183.1-P Field mustard nucleus 25.89 42.03
Bra040234.1-P Field mustard nucleus 25.0 41.79
EER88428 Sorghum nucleus 44.94 39.74
Zm00001d053391_P001 Maize cytosol, nucleus, plastid 42.56 38.13
Os06t0526100-01 Rice cytosol, endoplasmic reticulum, nucleus 44.64 37.97
EES06610 Sorghum nucleus 44.94 37.94
Zm00001d016095_P001 Maize nucleus 43.15 36.9
Os02t0257500-00 Rice nucleus 43.15 34.94
Bra040856.1-P Field mustard nucleus 21.13 32.72
Bra028351.1-P Field mustard nucleus 28.87 26.94
Bra025007.1-P Field mustard nucleus 21.43 26.28
Bra028357.1-P Field mustard nucleus 31.25 26.25
Bra001929.1-P Field mustard nucleus 31.25 25.93
Bra016377.1-P Field mustard nucleus 22.62 25.17
Bra037414.1-P Field mustard nucleus 22.92 24.76
Bra004505.1-P Field mustard nucleus 19.64 24.35
Bra012329.1-P Field mustard nucleus 21.73 24.09
Bra017533.1-P Field mustard nucleus 20.54 23.88
Bra031865.1-P Field mustard nucleus 15.18 23.39
Bra007644.1-P Field mustard nucleus 19.35 23.3
Bra008017.1-P Field mustard nucleus 22.32 23.01
Bra003886.1-P Field mustard nucleus 21.73 22.53
Bra016080.1-P Field mustard nucleus 21.73 22.46
Bra027958.1-P Field mustard nucleus 19.35 22.26
Bra040483.1-P Field mustard nucleus 19.05 20.13
Protein Annotations
EnsemblPlants:Bra029088.1EnsemblPlants:Bra029088.1-PEnsemblPlantsGene:Bra029088Gene3D:4.10.280.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:bHLH_dom
ncoils:CoilPANTHER:PTHR11514PANTHER:PTHR11514:SF58PFAM:PF00010PFscan:PS50888SEG:seg
SMART:SM00353SUPFAM:SSF47459UniParc:UPI000253FFEFUniProt:M4EJX1MapMan:15.5.32:
Description
AT5G53210 (E=2e-099) SPCH | SPCH (SPEECHLESS); DNA binding / transcription factor
Coordinates
chrA03:+:6297095..6298416
Molecular Weight (calculated)
36878.8 Da
IEP (calculated)
5.904
GRAVY (calculated)
-0.512
Length
336 amino acids
Sequence
(BLAST)
001: MSDFLEECEF VDTSLAEDDL FAILESLEGA GEISPTAAST PKDGATSSKE LVTDPNYETP SPKKKRKRLE TEKEDEEEED GEEEENKQQK MSHVTVERNR
101: RKQMNEHLTV LRSLMPCFYV KRGDQASIIG GVVEYISELQ QVLQSLEAKK QRKTYAEVLS PRLVPSPRPS PPVLSPRKPP LSPRISHHHL LLPPISPRTP
201: QPTSPYLAHA PKLPLIPQPP LRSYSSLAGG SSLGDPPPYS PASSSSSPSV SSIRESSVIN ELVANSKSAL ADVEVKFSGA NVLLKTVSHK IPGQVLKIIA
301: ALEDLALEIL QVNINTADET MLNSFTIKVR SNNHPN
Best Arabidopsis Sequence Match ( AT5G53210.2 )
(BLAST)
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKVRTNNHP N
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.