Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY47059 | Canola | nucleus | 97.62 | 93.98 |
CDY38734 | Canola | nucleus | 95.83 | 91.22 |
Bra022638.1-P | Field mustard | nucleus | 87.2 | 83.71 |
AT5G53210.1 | Thale cress | nucleus | 88.99 | 82.14 |
Bra003073.1-P | Field mustard | nucleus | 85.71 | 66.51 |
GSMUA_Achr10P... | Banana | nucleus | 44.64 | 57.47 |
KRH53438 | Soybean | nucleus | 58.93 | 56.73 |
KRH64504 | Soybean | nucleus | 58.04 | 56.69 |
KRH18131 | Soybean | nucleus | 56.55 | 56.55 |
VIT_16s0050g02500.t01 | Wine grape | nucleus | 56.25 | 55.92 |
KRH16521 | Soybean | nucleus | 53.57 | 54.38 |
GSMUA_Achr5P06780_001 | Banana | cytosol | 43.75 | 51.94 |
Solyc03g007410.2.1 | Tomato | nucleus | 51.49 | 51.8 |
GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 46.73 | 50.48 |
PGSC0003DMT400023497 | Potato | nucleus | 52.98 | 50.14 |
TraesCS7B01G232000.1 | Wheat | cytosol | 47.02 | 43.41 |
TraesCS7A01G350900.1 | Wheat | nucleus | 46.73 | 43.13 |
HORVU7Hr1G079250.1 | Barley | cytosol | 46.73 | 43.01 |
TraesCS7D01G327900.1 | Wheat | nucleus | 46.43 | 42.86 |
Zm00001d046096_P001 | Maize | nucleus | 44.05 | 42.77 |
Bra020775.1-P | Field mustard | nucleus | 25.3 | 42.29 |
Bra001183.1-P | Field mustard | nucleus | 25.89 | 42.03 |
Bra040234.1-P | Field mustard | nucleus | 25.0 | 41.79 |
EER88428 | Sorghum | nucleus | 44.94 | 39.74 |
Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 42.56 | 38.13 |
Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 44.64 | 37.97 |
EES06610 | Sorghum | nucleus | 44.94 | 37.94 |
Zm00001d016095_P001 | Maize | nucleus | 43.15 | 36.9 |
Os02t0257500-00 | Rice | nucleus | 43.15 | 34.94 |
Bra040856.1-P | Field mustard | nucleus | 21.13 | 32.72 |
Bra028351.1-P | Field mustard | nucleus | 28.87 | 26.94 |
Bra025007.1-P | Field mustard | nucleus | 21.43 | 26.28 |
Bra028357.1-P | Field mustard | nucleus | 31.25 | 26.25 |
Bra001929.1-P | Field mustard | nucleus | 31.25 | 25.93 |
Bra016377.1-P | Field mustard | nucleus | 22.62 | 25.17 |
Bra037414.1-P | Field mustard | nucleus | 22.92 | 24.76 |
Bra004505.1-P | Field mustard | nucleus | 19.64 | 24.35 |
Bra012329.1-P | Field mustard | nucleus | 21.73 | 24.09 |
Bra017533.1-P | Field mustard | nucleus | 20.54 | 23.88 |
Bra031865.1-P | Field mustard | nucleus | 15.18 | 23.39 |
Bra007644.1-P | Field mustard | nucleus | 19.35 | 23.3 |
Bra008017.1-P | Field mustard | nucleus | 22.32 | 23.01 |
Bra003886.1-P | Field mustard | nucleus | 21.73 | 22.53 |
Bra016080.1-P | Field mustard | nucleus | 21.73 | 22.46 |
Bra027958.1-P | Field mustard | nucleus | 19.35 | 22.26 |
Bra040483.1-P | Field mustard | nucleus | 19.05 | 20.13 |
Protein Annotations
EnsemblPlants:Bra029088.1 | EnsemblPlants:Bra029088.1-P | EnsemblPlantsGene:Bra029088 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
ncoils:Coil | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000253FFEF | UniProt:M4EJX1 | MapMan:15.5.32 | : |
Description
AT5G53210 (E=2e-099) SPCH | SPCH (SPEECHLESS); DNA binding / transcription factor
Coordinates
chrA03:+:6297095..6298416
Molecular Weight (calculated)
36878.8 Da
IEP (calculated)
5.904
GRAVY (calculated)
-0.512
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDFLEECEF VDTSLAEDDL FAILESLEGA GEISPTAAST PKDGATSSKE LVTDPNYETP SPKKKRKRLE TEKEDEEEED GEEEENKQQK MSHVTVERNR
101: RKQMNEHLTV LRSLMPCFYV KRGDQASIIG GVVEYISELQ QVLQSLEAKK QRKTYAEVLS PRLVPSPRPS PPVLSPRKPP LSPRISHHHL LLPPISPRTP
201: QPTSPYLAHA PKLPLIPQPP LRSYSSLAGG SSLGDPPPYS PASSSSSPSV SSIRESSVIN ELVANSKSAL ADVEVKFSGA NVLLKTVSHK IPGQVLKIIA
301: ALEDLALEIL QVNINTADET MLNSFTIKVR SNNHPN
101: RKQMNEHLTV LRSLMPCFYV KRGDQASIIG GVVEYISELQ QVLQSLEAKK QRKTYAEVLS PRLVPSPRPS PPVLSPRKPP LSPRISHHHL LLPPISPRTP
201: QPTSPYLAHA PKLPLIPQPP LRSYSSLAGG SSLGDPPPYS PASSSSSPSV SSIRESSVIN ELVANSKSAL ADVEVKFSGA NVLLKTVSHK IPGQVLKIIA
301: ALEDLALEIL QVNINTADET MLNSFTIKVR SNNHPN
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKVRTNNHP N
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKVRTNNHP N
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.