Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88428 | Sorghum | nucleus | 89.02 | 81.05 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 61.27 | 58.24 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 60.98 | 57.97 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 60.69 | 57.69 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 60.4 | 57.26 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 64.16 | 56.2 |
| GSMUA_Achr10P... | Banana | nucleus | 38.73 | 51.34 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 50.0 | 46.13 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 37.57 | 45.94 |
| Solyc03g007410.2.1 | Tomato | nucleus | 44.22 | 45.81 |
| Bra029088.1-P | Field mustard | nucleus | 42.77 | 44.05 |
| KRH53438 | Soybean | nucleus | 44.22 | 43.84 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 42.77 | 43.79 |
| KRH64504 | Soybean | nucleus | 43.35 | 43.6 |
| KRH18131 | Soybean | nucleus | 42.2 | 43.45 |
| PGSC0003DMT400023497 | Potato | nucleus | 44.51 | 43.38 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 38.73 | 43.09 |
| CDX96201 | Canola | nucleus | 43.06 | 42.33 |
| CDY47059 | Canola | nucleus | 42.49 | 42.12 |
| Bra022638.1-P | Field mustard | nucleus | 42.49 | 42.0 |
| Zm00001d016095_P001 | Maize | nucleus | 47.4 | 41.73 |
| KRH16521 | Soybean | nucleus | 39.88 | 41.69 |
| CDY14397 | Canola | nucleus | 42.77 | 41.69 |
| CDY19692 | Canola | nucleus | 42.49 | 41.64 |
| CDY38734 | Canola | nucleus | 42.49 | 41.64 |
| AT5G53210.1 | Thale cress | nucleus | 43.06 | 40.93 |
| Zm00001d009778_P001 | Maize | nucleus | 23.99 | 37.9 |
| Bra003073.1-P | Field mustard | nucleus | 42.77 | 34.18 |
| Zm00001d031260_P001 | Maize | nucleus | 18.5 | 29.63 |
| Zm00001d026046_P001 | Maize | nucleus | 20.81 | 21.43 |
| Zm00001d027987_P001 | Maize | nucleus | 20.23 | 21.15 |
| Zm00001d002492_P001 | Maize | mitochondrion | 10.69 | 21.02 |
| Zm00001d048229_P001 | Maize | nucleus | 21.68 | 21.01 |
| Zm00001d027419_P001 | Maize | nucleus | 17.92 | 19.94 |
| Zm00001d020790_P001 | Maize | nucleus | 19.08 | 19.88 |
| Zm00001d051509_P001 | Maize | nucleus | 19.08 | 19.88 |
| Zm00001d005939_P001 | Maize | nucleus | 18.79 | 19.52 |
| Zm00001d052192_P001 | Maize | nucleus | 19.36 | 19.42 |
| Zm00001d018119_P001 | Maize | nucleus | 19.65 | 19.32 |
| Zm00001d009715_P001 | Maize | nucleus | 22.83 | 18.9 |
| Zm00001d048478_P001 | Maize | nucleus | 17.34 | 18.52 |
| Zm00001d017677_P001 | Maize | nucleus | 17.92 | 16.94 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A1D6P0V8 | ProteinID:AQL03715.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF97 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0008432A42 | EnsemblPlantsGene:Zm00001d046096 | EnsemblPlants:Zm00001d046096_P001 | EnsemblPlants:Zm00001d046096_T001 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
bHLH-transcription factor 34Putative HLH DNA-binding domain superfamily protein
Coordinates
chr9:+:63010300..63011576
Molecular Weight (calculated)
36855.1 Da
IEP (calculated)
8.544
GRAVY (calculated)
-0.280
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEALCDQLF SDIDGDLMRQ HTSDTDDLLG ILESWEDCVS GGVATTPCGA EVPQTTAADG AAKRRRQGCR DVDAVPAAPK RQKCSPVSSA ASEDGAVNKT
101: SHITVERNRR KQMNEHIAVL RSLMPCFYVK RGDQASIIGG VVDYIKELQQ VLQSLEAKKQ RKAYTEQVLS PRPPACCSPR PPLSPRPHML PLKSTPPISP
201: RPAVPISPRT PPAPSSPYKP CRLPPPGSSA YASPAMTTTR EPTAATYLPS LDTIAADLCA YAANKNKQLQ ALAAAAGGDV VLPDVKVEFS GANLVVKTVS
301: HRAPGQTVKV IAALEGRSLE ILDAKINTIN DTAVNSYTIK VLLSSS
101: SHITVERNRR KQMNEHIAVL RSLMPCFYVK RGDQASIIGG VVDYIKELQQ VLQSLEAKKQ RKAYTEQVLS PRPPACCSPR PPLSPRPHML PLKSTPPISP
201: RPAVPISPRT PPAPSSPYKP CRLPPPGSSA YASPAMTTTR EPTAATYLPS LDTIAADLCA YAANKNKQLQ ALAAAAGGDV VLPDVKVEFS GANLVVKTVS
301: HRAPGQTVKV IAALEGRSLE ILDAKINTIN DTAVNSYTIK VLLSSS
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKVRTNNHP N
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKVRTNNHP N
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.