Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046096_P001 | Maize | nucleus | 81.05 | 89.02 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 61.05 | 63.74 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 60.26 | 62.91 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 60.26 | 62.74 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 60.0 | 62.64 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 60.53 | 58.23 |
| GSMUA_Achr10P... | Banana | nucleus | 35.79 | 52.11 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 38.68 | 51.94 |
| Solyc03g007410.2.1 | Tomato | nucleus | 45.0 | 51.2 |
| EES06610 | Sorghum | nucleus | 52.63 | 50.25 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 39.74 | 48.55 |
| KRH18131 | Soybean | nucleus | 42.63 | 48.21 |
| PGSC0003DMT400023497 | Potato | nucleus | 45.0 | 48.17 |
| KRH53438 | Soybean | nucleus | 44.21 | 48.14 |
| KRH64504 | Soybean | nucleus | 43.42 | 47.97 |
| CDY38734 | Canola | nucleus | 44.47 | 47.88 |
| CDY47059 | Canola | nucleus | 43.95 | 47.85 |
| CDY19692 | Canola | nucleus | 43.95 | 47.31 |
| CDY14397 | Canola | nucleus | 43.95 | 47.04 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 41.84 | 47.04 |
| KRH16521 | Soybean | nucleus | 40.79 | 46.83 |
| AT5G53210.1 | Thale cress | nucleus | 44.74 | 46.7 |
| Bra029088.1-P | Field mustard | nucleus | 39.74 | 44.94 |
| Bra022638.1-P | Field mustard | nucleus | 40.0 | 43.43 |
| CDX96201 | Canola | nucleus | 40.0 | 43.18 |
| KXG22733 | Sorghum | nucleus | 26.05 | 41.6 |
| Bra003073.1-P | Field mustard | nucleus | 40.79 | 35.8 |
| KXG27015 | Sorghum | cytosol | 21.05 | 23.32 |
| OQU91887 | Sorghum | nucleus | 19.74 | 23.15 |
| EER95359 | Sorghum | nucleus | 21.32 | 22.69 |
| KXG30709 | Sorghum | nucleus | 20.0 | 21.71 |
| OQU93358 | Sorghum | nucleus | 18.42 | 21.67 |
| EER96894 | Sorghum | nucleus | 18.95 | 21.3 |
| KXG22636 | Sorghum | nucleus | 24.47 | 20.35 |
| EES07423 | Sorghum | nucleus | 18.42 | 20.06 |
| KXG27016 | Sorghum | cytosol, nucleus, plastid | 17.89 | 19.65 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:8058852 | UniProt:C5Z3L8 | ncoils:Coil | EnsemblPlants:EER88428 |
| ProteinID:EER88428 | ProteinID:EER88428.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF97 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3010G152700 | SUPFAM:SSF47459 | UniParc:UPI0001A8911D | RefSeq:XP_002437061.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:44484308..44487797
Molecular Weight (calculated)
40324.0 Da
IEP (calculated)
7.935
GRAVY (calculated)
-0.321
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEALCDQLF SDVDGELMRQ HTSDTDDLLG ILEAWEDCVT GGGATTPRGA DVLHQSASDA AATPKAAAAK RRRQGCREED GTAVPAPKRQ RCSPVSSDAA
101: AASEDGAANK TSHITVERNR RKQMNEHLAV LRSLMPCFYV KRGDQASIIG GVVDYIKELQ QVLQSLEAKK QRKAYTEQVL SPRPPACCSP RPPLSPRPPL
201: PPLKSTPPIS PRPAVPISPR TPPPAPSSPY KPRRQPISVP LPPPGSSAYA SPAMTPTREP AAASYLPSLD TVAADLCAYA ATNKQLQPAL PAAAGGVVVL
301: PDVKVEFSGA NLVVKTVSHR APGQTVKVIA ALEGRSLEIL DAKINTVNDT AVNSYTIKIG IECELSAEEL VQEIQQAFSS
101: AASEDGAANK TSHITVERNR RKQMNEHLAV LRSLMPCFYV KRGDQASIIG GVVDYIKELQ QVLQSLEAKK QRKAYTEQVL SPRPPACCSP RPPLSPRPPL
201: PPLKSTPPIS PRPAVPISPR TPPPAPSSPY KPRRQPISVP LPPPGSSAYA SPAMTPTREP AAASYLPSLD TVAADLCAYA ATNKQLQPAL PAAAGGVVVL
301: PDVKVEFSGA NLVVKTVSHR APGQTVKVIA ALEGRSLEIL DAKINTVNDT AVNSYTIKIG IECELSAEEL VQEIQQAFSS
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.