CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026046_P001	Maize	nucleus	80.47	82.14
Zm00001d002492_P001	Maize	mitochondrion	35.86	69.89
HORVU2Hr1G106030.2	Barley	cytosol, mitochondrion, nucleus	18.66	62.14
GSMUA_Achr11P...	Banana	mitochondrion	30.61	55.56
TraesCS2B01G469800.1	Wheat	nucleus	48.98	51.38
TraesCS2B01G469700.1	Wheat	nucleus	48.98	51.38
KXG27016	Sorghum	cytosol, nucleus, plastid	51.6	51.16
TraesCS2D01G448000.1	Wheat	nucleus	48.4	50.15
TraesCS2A01G448800.1	Wheat	nucleus	47.81	49.55
EES07423	Sorghum	nucleus	47.23	46.42
VIT_02s0012g01450.t01	Wine grape	nucleus	39.07	42.54
GSMUA_Achr11P...	Banana	nucleus	37.03	42.33
KRH45428	Soybean	nucleus	37.32	42.24
KRH75598	Soybean	nucleus	36.73	41.58
PGSC0003DMT400045210	Potato	nucleus	38.48	40.0
EER96894	Sorghum	nucleus	39.36	39.94
Solyc08g076820.2.1	Tomato	nucleus	38.19	39.94
KXG30709	Sorghum	nucleus	39.94	39.14
OQU91887	Sorghum	nucleus	35.57	37.65
CDY03201	Canola	cytosol	19.53	37.02
EER95359	Sorghum	nucleus	38.48	36.97
Bra025007.1-P	Field mustard	nucleus	28.28	35.4
Bra017533.1-P	Field mustard	nucleus	29.45	34.95
CDY63053	Canola	nucleus	32.65	34.57
CDX77682	Canola	nucleus	32.65	34.57
KXG22733	Sorghum	nucleus	23.91	34.45
AT5G46690.1	Thale cress	nucleus	32.07	33.64
CDY35175	Canola	nucleus	28.57	33.33
OQU93358	Sorghum	nucleus	29.45	31.27
KXG22636	Sorghum	nucleus	28.57	21.44
EER88428	Sorghum	nucleus	23.32	21.05
EES06610	Sorghum	nucleus	23.62	20.35

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1B6PMY0	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KXG27015
ProteinID:KXG27015	ProteinID:KXG27015.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF31
SMART:SM00353	EnsemblPlantsGene:SORBI_3006G197400	SUPFAM:SSF47459	UniParc:UPI00081AC0DE	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:54993166..54996602

Molecular Weight (calculated)

36287.7 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.243

Length

343 amino acids

Sequence
(BLAST)

001: MALEALCTTT SDVLVYDTFN AAAAACAASA GTGSFLFGNA APVEVPPAAA MASQANGESG VQQVRRNRRR RQRSAKNAVD AESQRMNHIA VERNRRRQMN
101: EYLAALRSLM PDSYVHRSDQ ASVVSGAIDF VKELEQQLQS LEAQKLALNQ QQRSDKAAER DAAQPSPGRD DPASAGNNSG DAAARGEVSA PELQPQPQPQ
201: PPPFARFFRY PQYAWLHATP AREDAVVAVG AGAEEKAEAS RASAVADVEV GTVVDSHASL RVMAPRRPGQ LLRMVAGMQA LGLAVLHLTV ATAPDATALY
301: TFSLKVEEGC GLATAEDIAV AVHHVLCIID AEASSRAAGP RAV

Best Arabidopsis Sequence Match ( AT5G46690.1 )
(BLAST)

001: MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPLPENDVI ISKNTISEIS NQEPPPQRQP PATNRGKKRR RRKPRVCKNE EEAENQRMTH IAVERNRRRQ
101: MNQHLSVLRS LMPQPFAHKG DQASIVGGAI DFIKELEHKL LSLEAQKHHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL SQFFLHSYDP SQENRNGSTS
201: SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTLATTKPP QLSKLVASLQ SLSLSILHLS VTTLDNYAIY SISAKVEESC QLSSVDDIAG AVHHMLSIIE
301: EEPFCCSSMS ELPFDFSLNH SNVTHSL

Arabidopsis Description

BHLH71Transcription factor bHLH71 [Source:UniProtKB/Swiss-Prot;Acc:Q56XR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.