Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045210 | Potato | nucleus | 93.9 | 93.33 |
| HORVU2Hr1G106030.2 | Barley | cytosol, mitochondrion, nucleus | 20.12 | 64.08 |
| VIT_02s0012g01450.t01 | Wine grape | nucleus | 60.37 | 62.86 |
| KRH75598 | Soybean | nucleus | 57.62 | 62.38 |
| GSMUA_Achr11P... | Banana | mitochondrion | 35.06 | 60.85 |
| KRH45428 | Soybean | nucleus | 56.1 | 60.73 |
| Bra025007.1-P | Field mustard | nucleus | 40.55 | 48.54 |
| CDX77682 | Canola | nucleus | 47.26 | 47.84 |
| CDY63053 | Canola | nucleus | 47.26 | 47.84 |
| Solyc12g087850.1.1 | Tomato | nucleus | 23.48 | 47.53 |
| GSMUA_Achr11P... | Banana | nucleus | 43.29 | 47.33 |
| AT5G46690.1 | Thale cress | nucleus | 46.95 | 47.09 |
| CDY03201 | Canola | cytosol | 25.61 | 46.41 |
| Solyc11g010340.1.1 | Tomato | nucleus | 40.24 | 44.3 |
| Bra017533.1-P | Field mustard | nucleus | 38.72 | 43.94 |
| TraesCS2A01G448800.1 | Wheat | nucleus | 43.29 | 42.9 |
| CDY35175 | Canola | nucleus | 38.41 | 42.86 |
| TraesCS2B01G469800.1 | Wheat | nucleus | 42.38 | 42.51 |
| TraesCS2B01G469700.1 | Wheat | nucleus | 42.38 | 42.51 |
| TraesCS2D01G448000.1 | Wheat | nucleus | 42.68 | 42.3 |
| TraesCS6B01G291200.1 | Wheat | nucleus | 42.07 | 41.07 |
| TraesCS6A01G264200.1 | Wheat | nucleus | 42.07 | 41.07 |
| Solyc04g074810.2.1 | Tomato | extracellular | 43.9 | 40.56 |
| Zm00001d051509_P001 | Maize | nucleus | 40.85 | 40.36 |
| HORVU6Hr1G067000.2 | Barley | nucleus | 42.68 | 40.35 |
| TraesCS6D01G250700.1 | Wheat | nucleus | 42.38 | 40.06 |
| EES07423 | Sorghum | nucleus | 42.38 | 39.83 |
| Zm00001d026046_P001 | Maize | nucleus | 40.55 | 39.58 |
| Solyc09g091760.1.1 | Tomato | nucleus | 29.57 | 39.27 |
| KXG27015 | Sorghum | cytosol | 39.94 | 38.19 |
| Os02t0691500-01 | Rice | nucleus | 42.68 | 37.53 |
| Solyc01g098720.2.1 | Tomato | nucleus | 37.5 | 37.5 |
| Zm00001d017677_P001 | Maize | nucleus | 41.77 | 37.43 |
| Solyc01g080050.2.1 | Tomato | nucleus | 21.65 | 36.41 |
| Zm00001d002492_P001 | Maize | mitochondrion | 18.29 | 34.09 |
| KXG27016 | Sorghum | cytosol, nucleus, plastid | 32.93 | 31.21 |
| Solyc05g053660.1.1 | Tomato | nucleus | 32.93 | 28.2 |
| Solyc03g007410.2.1 | Tomato | nucleus | 22.87 | 22.46 |
Protein Annotations
| EMBL:GQ261233 | EnsemblPlants:Solyc08g076820.2.1 | EnsemblPlantsGene:Solyc08g076820.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF31 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000243C62E | UniProt:G8Z255 | MapMan:15.5.32 | : |
Description
Transcription factor bHLH71 [Source:Projected from Arabidopsis thaliana (AT5G46690) UniProtKB/Swiss-Prot;Acc:Q56XR0]
Coordinates
chr8:+:60730589..60733605
Molecular Weight (calculated)
36761.4 Da
IEP (calculated)
6.319
GRAVY (calculated)
-0.472
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEALSTNE LLNFIIYDTI STTTTTTNSN NNLDENALFF DNHEENNAFL LKPQDFCTTT PLEQQYSIAA SVPRPESSRE KNNLSVAAQS GGGGGGRKKR
101: RRRPKICKNK EEAENQRMTH IAVERNRRKQ MNEHLSVLRS LMPESYVQRG DQASIVGGAI EFVKELEHIL QSLEAQKFVL LQQQQEGGTS NDNDDCDGGK
201: REVSKADYVG TPFAQFFSYP QYTCCELPNK YTSKSKAAIA DIEVTLIETH ANVRILSRRR FRQLSKLVAA FQSLYISVLH LNVTTLDPLV LYSISVKVEE
301: GCQLNSADDI AGAVHHMLRI IEEEAATL
101: RRRPKICKNK EEAENQRMTH IAVERNRRKQ MNEHLSVLRS LMPESYVQRG DQASIVGGAI EFVKELEHIL QSLEAQKFVL LQQQQEGGTS NDNDDCDGGK
201: REVSKADYVG TPFAQFFSYP QYTCCELPNK YTSKSKAAIA DIEVTLIETH ANVRILSRRR FRQLSKLVAA FQSLYISVLH LNVTTLDPLV LYSISVKVEE
301: GCQLNSADDI AGAVHHMLRI IEEEAATL
001: MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPLPENDVI ISKNTISEIS NQEPPPQRQP PATNRGKKRR RRKPRVCKNE EEAENQRMTH IAVERNRRRQ
101: MNQHLSVLRS LMPQPFAHKG DQASIVGGAI DFIKELEHKL LSLEAQKHHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL SQFFLHSYDP SQENRNGSTS
201: SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTLATTKPP QLSKLVASLQ SLSLSILHLS VTTLDNYAIY SISAKVEESC QLSSVDDIAG AVHHMLSIIE
301: EEPFCCSSMS ELPFDFSLNH SNVTHSL
101: MNQHLSVLRS LMPQPFAHKG DQASIVGGAI DFIKELEHKL LSLEAQKHHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL SQFFLHSYDP SQENRNGSTS
201: SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTLATTKPP QLSKLVASLQ SLSLSILHLS VTTLDNYAIY SISAKVEESC QLSSVDDIAG AVHHMLSIIE
301: EEPFCCSSMS ELPFDFSLNH SNVTHSL
Arabidopsis Description
BHLH71Transcription factor bHLH71 [Source:UniProtKB/Swiss-Prot;Acc:Q56XR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.