Factsheet for TraesCS6D01G250700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G291200.1	Wheat	nucleus	93.08	96.13
TraesCS6A01G264200.1	Wheat	nucleus	90.49	93.45
HORVU6Hr1G067000.2	Barley	nucleus	90.2	90.2
GSMUA_Achr11P...	Banana	mitochondrion	34.87	64.02
EES07423	Sorghum	nucleus	63.11	62.75
TraesCS2D01G448000.1	Wheat	nucleus	59.37	62.24
Os02t0691500-01	Rice	nucleus	65.42	60.86
Zm00001d051509_P001	Maize	nucleus	57.35	59.94
Zm00001d017677_P001	Maize	nucleus	61.67	58.47
GSMUA_Achr11P...	Banana	nucleus	44.96	52.0
VIT_02s0012g01450.t01	Wine grape	nucleus	41.79	46.03
KRH45428	Soybean	nucleus	40.06	45.87
KRH75598	Soybean	nucleus	39.77	45.54
TraesCS4D01G302700.1	Wheat	nucleus	38.62	43.23
PGSC0003DMT400045210	Potato	nucleus	40.35	42.42
Solyc08g076820.2.1	Tomato	nucleus	40.06	42.38
TraesCS6D01G294900.1	Wheat	nucleus	37.75	41.07
CDY03201	Canola	cytosol	21.33	40.88
TraesCS6D01G315200.1	Wheat	nucleus	40.06	40.64
TraesCS5D01G255100.1	Wheat	nucleus	37.46	38.69
Bra025007.1-P	Field mustard	nucleus	30.26	38.32
CDY63053	Canola	nucleus	34.87	37.35
CDX77682	Canola	nucleus	34.87	37.35
Bra017533.1-P	Field mustard	nucleus	30.84	37.02
AT5G46690.1	Thale cress	nucleus	34.87	37.0
CDY35175	Canola	nucleus	29.68	35.03
TraesCS2D01G122800.1	Wheat	nucleus	20.75	33.49
TraesCS4D01G342000.1	Wheat	extracellular	27.67	31.68
TraesCS1D01G289400.1	Wheat	nucleus	29.11	24.11
TraesCS7D01G327900.1	Wheat	nucleus	21.61	20.6

Protein Annotations

EnsemblPlants:TraesCS6D01G250700.1	EnsemblPlantsGene:TraesCS6D01G250700	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF31	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr6D:-:354417838..354420641

Molecular Weight (calculated)

37050.0 Da

IEP (calculated)

6.706

GRAVY (calculated)

-0.147

Length

347 amino acids

Sequence
(BLAST)

001: MALVDALCAS SVDNAALVYS TFNAAGFLFD NAAGFYDDTG IAGGPALALQ AADRAPGLSA AGDVAPCLEK QATLSPAPPR RKRRRRARSC KSREETECQR
101: MTHIAVERNR RRQMNEYLVV LRSLMPESYV QRGDQASIVG GAIDFVKELE QQLQSLEAQK RALAHQQQHK AGRDAAPLPT AMPARASTSG GIGNACVEST
201: SNCSSSVTEA DGAPDAPPFA GFFTYPQYVW RQSPRDATTL SADESRAGVA DIEVTLVETH ASLRVMAPRR PGQLLRMVAG LQALRLTVLH LNVTALDSLA
301: LYSLSLKVEE GCGLTTADDI AAAVHHVLCF IHAEAEAAPQ QLLAPAQ

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.