Factsheet for TraesCS6A01G264200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G250700.1	Wheat	nucleus	93.45	90.49
TraesCS6B01G291200.1	Wheat	nucleus	89.58	89.58
HORVU6Hr1G067000.2	Barley	nucleus	91.67	88.76
GSMUA_Achr11P...	Banana	mitochondrion	36.31	64.55
EES07423	Sorghum	nucleus	66.37	63.9
Zm00001d051509_P001	Maize	nucleus	61.01	61.75
TraesCS2A01G448800.1	Wheat	nucleus	59.23	60.12
Zm00001d017677_P001	Maize	nucleus	65.18	59.84
Os02t0691500-01	Rice	nucleus	65.48	58.98
GSMUA_Achr11P...	Banana	nucleus	45.83	51.33
KRH45428	Soybean	nucleus	40.77	45.21
KRH75598	Soybean	nucleus	40.48	44.88
VIT_02s0012g01450.t01	Wine grape	nucleus	41.96	44.76
TraesCS4A01G404700.1	Wheat	nucleus	40.18	43.55
TraesCS6A01G315700.1	Wheat	nucleus	39.58	43.32
PGSC0003DMT400045210	Potato	nucleus	41.37	42.12
Solyc08g076820.2.1	Tomato	nucleus	41.07	42.07
CDY03201	Canola	cytosol	21.43	39.78
TraesCS5A01G248200.1	Wheat	nucleus	40.48	39.42
TraesCS6A01G335500.1	Wheat	nucleus	40.77	39.03
Bra025007.1-P	Field mustard	nucleus	30.95	37.96
CDY63053	Canola	nucleus	35.71	37.04
CDX77682	Canola	nucleus	35.71	37.04
AT5G46690.1	Thale cress	nucleus	36.01	37.0
Bra017533.1-P	Field mustard	nucleus	30.95	35.99
TraesCS2A01G120700.1	Wheat	nucleus	22.32	34.72
CDY35175	Canola	nucleus	30.06	34.35
TraesCS5A01G515800.1	Wheat	extracellular	29.46	32.67
TraesCS1A01G290800.1	Wheat	nucleus	29.76	23.81
TraesCS7A01G350900.1	Wheat	nucleus	22.32	20.6

Protein Annotations

EnsemblPlants:TraesCS6A01G264200.1	EnsemblPlantsGene:TraesCS6A01G264200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF31	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr6A:+:487691545..487694680

Molecular Weight (calculated)

35845.3 Da

IEP (calculated)

6.419

GRAVY (calculated)

-0.189

Length

336 amino acids

Sequence
(BLAST)

001: MALVDALCAS SVDNAALVYS TFNAAGFLFD NAAGFYDGAG IAGAPAHEPQ AADVAAPAEK QATSSPAPPR RKRRRRARSC KSREETECQR MTHIAVERNR
101: RRQMNEYLVV LRSLMPESYV QRGDQASIVG GAIDFVKELE QQLQSLEAQK RALAHQQQQH KAGRDAAPLP AGASTSGGIG NACVESTSNC SSSVTEADGA
201: PDAPPFAGFF TYPQYVWRQS PRDATTLSAD ESRAGVADVE VNLVETHASL RVMAPRRPGQ LLRMVAGLQA LRLAVLHLNV TALDALVLYS LSLKVEEGCG
301: LTTADDIAAA VHHVLCFIHA EAEAEAASQQ LLAPAQ

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.