Factsheet for TraesCS5A01G248200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G255100.1	Wheat	nucleus	91.59	94.05
TraesCS5B01G245900.1	Wheat	nucleus	93.33	93.6
Os09t0468700-00	Rice	nucleus	73.04	71.79
Zm00001d020790_P001	Maize	nucleus	64.06	66.57
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	35.65	66.13
HORVU5Hr1G070000.3	Barley	nucleus, plastid	90.43	66.1
EER96894	Sorghum	nucleus	63.77	65.09
Zm00001d005939_P001	Maize	nucleus	62.32	64.56
GSMUA_Achr9P15000_001	Banana	mitochondrion	34.78	60.3
TraesCS6A01G335500.1	Wheat	nucleus	55.07	54.13
TraesCS4A01G404700.1	Wheat	nucleus	45.8	50.97
GSMUA_Achr5P05450_001	Banana	nucleus	40.0	48.08
VIT_07s0191g00240.t01	Wine grape	nucleus	44.64	47.83
TraesCS6A01G315700.1	Wheat	nucleus	42.32	47.56
Solyc11g010340.1.1	Tomato	nucleus	40.0	46.31
PGSC0003DMT400041644	Potato	nucleus	28.7	41.77
TraesCS2A01G448800.1	Wheat	nucleus	39.13	40.79
TraesCS6A01G264200.1	Wheat	nucleus	39.42	40.48
CDY37820	Canola	nucleus	23.48	37.16
Bra031865.1-P	Field mustard	nucleus	22.9	36.24
CDY33966	Canola	nucleus	29.57	33.77
AT5G65320.1	Thale cress	nucleus	28.7	33.45
TraesCS2A01G120700.1	Wheat	nucleus	20.0	31.94
TraesCS5A01G515800.1	Wheat	extracellular	27.25	31.02
TraesCS1A01G290800.1	Wheat	nucleus	28.12	23.1
TraesCS7A01G350900.1	Wheat	nucleus	21.45	20.33

Protein Annotations

EnsemblPlants:TraesCS5A01G248200.1	EnsemblPlantsGene:TraesCS5A01G248200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr5A:+:462145087..462146684

Molecular Weight (calculated)

36215.9 Da

IEP (calculated)

5.255

GRAVY (calculated)

-0.209

Length

345 amino acids

Sequence
(BLAST)

001: MALEAAVLSR AAAGLFGRCA MAGAGAGGAW NGLFGGGEGL AGLDGGDWDA AVAAACSSML LPQAAFQELD ISAVAATAAP QEESGGRGEM SAAGVGQDDA
101: APVAAAATGR RKRRRTRMAK NSEEVESQRM THIAVERNRR KQMNEYLAAL RSLMPPSYAQ RGDQASIVGG AINFVKELEQ LLQTLETHRQ ARERAAAVDG
201: GEAPPPPFAN FFTFPQYSMS ATPAPAPAPP ANNDEGADGC AEAEASGSKP SAVADVEVTM VESHANLRML SRRRPRQLLR LLVGLQGHRL TVLHLNMSSA
301: GHMVLYSLSL KVEDDCQLTS VDEIATAAHQ IVEKIQEEQE LTAAA

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.