Factsheet for TraesCS6A01G315700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G294900.1	Wheat	nucleus	95.44	91.85
TraesCS6B01G346100.1	Wheat	nucleus	94.14	90.6
Os02t0759000-01	Rice	cytosol	34.2	69.08
KXG30709	Sorghum	nucleus	68.4	60.0
Zm00001d052192_P001	Maize	nucleus	66.12	58.84
Zm00001d018119_P001	Maize	nucleus	67.43	58.81
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	34.53	56.99
GSMUA_Achr9P15000_001	Banana	mitochondrion	34.85	53.77
Solyc11g010340.1.1	Tomato	nucleus	44.95	46.31
GSMUA_Achr5P05450_001	Banana	nucleus	42.67	45.64
TraesCS4A01G404700.1	Wheat	nucleus	45.93	45.48
PGSC0003DMT400041644	Potato	nucleus	34.2	44.3
VIT_07s0191g00240.t01	Wine grape	nucleus	46.25	44.1
TraesCS5A01G248200.1	Wheat	nucleus	47.56	42.32
TraesCS2A01G448800.1	Wheat	nucleus	44.63	41.39
TraesCS6A01G335500.1	Wheat	nucleus	47.23	41.31
TraesCS6A01G264200.1	Wheat	nucleus	43.32	39.58
CDY37820	Canola	nucleus	25.41	35.78
Bra031865.1-P	Field mustard	nucleus	25.08	35.32
CDY33966	Canola	nucleus	33.22	33.77
TraesCS2A01G120700.1	Wheat	nucleus	22.8	32.41
AT5G65320.1	Thale cress	nucleus	30.29	31.42
TraesCS5A01G515800.1	Wheat	extracellular	29.97	30.36
TraesCS1A01G290800.1	Wheat	nucleus	30.62	22.38
TraesCS7A01G350900.1	Wheat	nucleus	23.78	20.05

Protein Annotations

EnsemblPlants:TraesCS6A01G315700.1	EnsemblPlantsGene:TraesCS6A01G315700	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF24	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr6A:+:552264687..552266481

Molecular Weight (calculated)

33157.5 Da

IEP (calculated)

8.984

GRAVY (calculated)

-0.221

Length

307 amino acids

Sequence
(BLAST)

001: MALEAVVFPH EHLACSTDKV AAAMSMYAPS LGRGISIVDE FEEKGGVVLQ EEAANYAWAA AVEGNWDENH CRPVSPPAAV APTTPAASGR GKASSSAAAR
101: RRRRRPKAVK NREETESQRR NHIAVERNRR RQMNDYLAVL RSSMPPSYAQ RGDQASIVAG AINFVKELEQ LLQSLEAQKR RRAQLASTPP FAGFFTFPQY
201: SVGAGAGAAD GSGARRGVAD VEVAVAESHA SVKVLVPRRP RQLVRMVVAM QCLGLTVLHL NATATADHLV FYSFSLRMED ECRLSTVDEI AAAVHQMVAE
301: VHAGGPC

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.