Factsheet for TraesCS2A01G448800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G448000.1	Wheat	nucleus	92.14	92.14
TraesCS2B01G469800.1	Wheat	nucleus	90.03	91.13
TraesCS2B01G469700.1	Wheat	nucleus	90.03	91.13
HORVU2Hr1G106030.2	Barley	cytosol, mitochondrion, nucleus	27.79	89.32
GSMUA_Achr11P...	Banana	mitochondrion	36.25	63.49
TraesCS6A01G264200.1	Wheat	nucleus	60.12	59.23
GSMUA_Achr11P...	Banana	nucleus	48.04	53.0
Zm00001d026046_P001	Maize	nucleus	51.96	51.19
Zm00001d002492_P001	Maize	mitochondrion	25.98	48.86
KXG27015	Sorghum	cytosol	49.55	47.81
KRH45428	Soybean	nucleus	41.69	45.54
KRH75598	Soybean	nucleus	41.69	45.54
TraesCS6A01G315700.1	Wheat	nucleus	41.39	44.63
VIT_02s0012g01450.t01	Wine grape	nucleus	41.99	44.13
PGSC0003DMT400045210	Potato	nucleus	43.81	43.94
Solyc08g076820.2.1	Tomato	nucleus	42.9	43.29
TraesCS4A01G404700.1	Wheat	nucleus	38.97	41.61
TraesCS5A01G248200.1	Wheat	nucleus	40.79	39.13
TraesCS6A01G335500.1	Wheat	nucleus	41.39	39.03
CDY03201	Canola	cytosol	20.85	38.12
Bra025007.1-P	Field mustard	nucleus	31.12	37.59
Bra017533.1-P	Field mustard	nucleus	32.33	37.02
KXG27016	Sorghum	cytosol, nucleus, plastid	38.37	36.71
AT5G46690.1	Thale cress	nucleus	36.25	36.7
CDX77682	Canola	nucleus	35.65	36.42
CDY63053	Canola	nucleus	35.35	36.11
CDY35175	Canola	nucleus	31.72	35.71
TraesCS2A01G120700.1	Wheat	nucleus	21.45	32.87
TraesCS5A01G515800.1	Wheat	extracellular	27.79	30.36
TraesCS1A01G290800.1	Wheat	nucleus	30.21	23.81
TraesCS7A01G350900.1	Wheat	nucleus	23.57	21.43

Protein Annotations

EnsemblPlants:TraesCS2A01G448800.1	EnsemblPlantsGene:TraesCS2A01G448800	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF31	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr2A:-:698131777..698134621

Molecular Weight (calculated)

35454.4 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.176

Length

331 amino acids

Sequence
(BLAST)

001: MTLDALCAAG DVLVYDTFNA AAAVSAAPAE SSLLFCDVAG AAWMAGSAAA EAPAVTIVPV EEGEKAQGRR KRRRRARSCK NREDAESQRM THIAVERNRR
101: RQMNEYLAVL RSLMPESYAH RGDQASIVGG AIDFVKELEQ LLQSLEAQKR TLLAQPQQEH KPLPIRDAMP SSSKTVTAAA TTTTSSGSGE GKQASAMREG
201: MGPPFAGFFT YPQYVCRLPP RDDADDRAGA ADIEVTLVET HANVRVMAPR RPGQLLRMVA GMEALRLTVL HLNVTTLGSL ALYSLSVKVE EGCGPTTADD
301: IAAAVHHVLC LVDAEATSQR LLAGGQQEIL S

Best Arabidopsis Sequence Match ( AT5G46690.1 )
(BLAST)

001: MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPLPENDVI ISKNTISEIS NQEPPPQRQP PATNRGKKRR RRKPRVCKNE EEAENQRMTH IAVERNRRRQ
101: MNQHLSVLRS LMPQPFAHKG DQASIVGGAI DFIKELEHKL LSLEAQKHHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL SQFFLHSYDP SQENRNGSTS
201: SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTLATTKPP QLSKLVASLQ SLSLSILHLS VTTLDNYAIY SISAKVEESC QLSSVDDIAG AVHHMLSIIE
301: EEPFCCSSMS ELPFDFSLNH SNVTHSL

Arabidopsis Description

BHLH71Transcription factor bHLH71 [Source:UniProtKB/Swiss-Prot;Acc:Q56XR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.