Factsheet for TraesCS6A01G335500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G315200.1	Wheat	nucleus	91.45	93.86
TraesCS6B01G366200.1	Wheat	nucleus	90.6	91.91
HORVU6Hr1G081120.4	Barley	nucleus	79.49	80.64
Zm00001d031260_P001	Maize	nucleus	41.03	66.67
Os08t0483900-01	Rice	nucleus	64.39	62.26
TraesCS5A01G248200.1	Wheat	nucleus	54.13	55.07
TraesCS4A01G404700.1	Wheat	nucleus	44.44	50.32
TraesCS6A01G315700.1	Wheat	nucleus	41.31	47.23
VIT_07s0191g00240.t01	Wine grape	nucleus	41.88	45.65
Solyc11g010340.1.1	Tomato	nucleus	38.18	44.97
TraesCS2A01G448800.1	Wheat	nucleus	39.03	41.39
TraesCS6A01G264200.1	Wheat	nucleus	39.03	40.77
PGSC0003DMT400041644	Potato	nucleus	27.07	40.08
CDY37820	Canola	nucleus	23.36	37.61
Bra031865.1-P	Field mustard	nucleus	22.79	36.7
CDY33966	Canola	nucleus	29.91	34.77
AT5G65320.1	Thale cress	nucleus	29.06	34.46
TraesCS2A01G120700.1	Wheat	nucleus	20.23	32.87
TraesCS5A01G515800.1	Wheat	extracellular	26.78	31.02
TraesCS1A01G290800.1	Wheat	nucleus	28.21	23.57
TraesCS7A01G350900.1	Wheat	nucleus	21.65	20.88

Protein Annotations

EnsemblPlants:TraesCS6A01G335500.1	EnsemblPlantsGene:TraesCS6A01G335500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR11969
PANTHER:PTHR11969:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:568014550..568016076

Molecular Weight (calculated)

37062.5 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.319

Length

351 amino acids

Sequence
(BLAST)

001: MALEAVVFSK GFFGRCAMAA EGVGGGGGVW GGNEHGHGGG VELDGSNAHC GAAVASASVM IPSAEVPEGS SSLLALPPPG HGGDRGDADD GAVGAASASG
101: AAGRRKRRRA RSVKNIEEAE SQRMTHIAVE RNRRKQMNEY LGVLRSLMPA SYVHRGDQAS IIGGAINYVK ELEQLVQSLE AHRHARLRDD CPVSGDVDSA
201: AAVPFVDFFT FPQYTMSVRH APATPAADAS ADGSGGNADN DGTSGSKQSA VADIEVTIVE SHASLKVLSR RRPRQLLRIV AGLQGHRLAV LHLNATSAGH
301: MALYCLSLKV EDDCRLSSVD DIAAAVHRIV ETIEREEEEE QRRRQQQQSC T

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.