Factsheet for TraesCS6B01G366200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G315200.1	Wheat	nucleus	92.2	93.27
TraesCS6A01G335500.1	Wheat	nucleus	91.91	90.6
HORVU6Hr1G081120.4	Barley	nucleus	78.9	78.9
Zm00001d031260_P001	Maize	nucleus	41.91	67.13
Os08t0483900-01	Rice	nucleus	64.16	61.16
TraesCS5B01G245900.1	Wheat	nucleus	53.18	53.49
TraesCS4B01G304500.1	Wheat	nucleus	46.53	52.1
VIT_07s0191g00240.t01	Wine grape	nucleus	42.2	45.34
Solyc11g010340.1.1	Tomato	nucleus	39.02	45.3
TraesCS6B01G346100.1	Wheat	nucleus	41.62	45.14
TraesCS2B01G469800.1	Wheat	nucleus	40.46	42.81
TraesCS2B01G469700.1	Wheat	nucleus	40.46	42.81
PGSC0003DMT400041644	Potato	nucleus	27.75	40.51
TraesCS6B01G291200.1	Wheat	nucleus	39.31	40.48
CDY37820	Canola	nucleus	23.41	37.16
Bra031865.1-P	Field mustard	nucleus	22.83	36.24
CDY33966	Canola	nucleus	29.77	34.11
AT5G65320.1	Thale cress	nucleus	28.32	33.11
TraesCS4B01G347100.1	Wheat	extracellular	26.88	31.0
TraesCS2B01G141600.1	Wheat	plastid	21.1	30.67
TraesCS1B01G300100.1	Wheat	nucleus	28.32	23.5
TraesCS7B01G232000.1	Wheat	cytosol	21.39	20.33

Protein Annotations

EnsemblPlants:TraesCS6B01G366200.1	EnsemblPlantsGene:TraesCS6B01G366200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR11969
PANTHER:PTHR11969:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:638934296..638935825

Molecular Weight (calculated)

36438.6 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.318

Length

346 amino acids

Sequence
(BLAST)

001: MALEAVVFSK GFFGRCAMAA EGVGGGGGFW GGNGHGHGGG MDLDGSNAHC GAAVASTEAP EGSSSLPALP PPGHGGDRGD ADDGAVGAAS ASGAAGRRKR
101: RRARSVKNIE EAESQRLTHI AVERNRRRQM NEYLGVLRSL MPASYVHRGD QASIIGGAIN YVKELEQLVQ SLEAHRHAPL RDDCPVSGDV STAVVPFADF
201: FTFPQYTMSV RHAPEAAAAT AEAADALADD GRGNAADGDT TSGSKQSAVA DIEVTIVESH ASLKVLSRRR PRQLLRIVAG LQGHRLAVLH LNATSAGHMA
301: LYCLSLKVED DCRLSSVDDI AAAVHRIVET IEREEEEEQR QQQSCT

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.