Factsheet for TraesCS6B01G291200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G250700.1	Wheat	nucleus	96.13	93.08
TraesCS6A01G264200.1	Wheat	nucleus	89.58	89.58
HORVU6Hr1G067000.2	Barley	nucleus	91.96	89.05
GSMUA_Achr11P...	Banana	mitochondrion	36.31	64.55
EES07423	Sorghum	nucleus	64.58	62.18
Os02t0691500-01	Rice	nucleus	67.26	60.59
TraesCS2B01G469700.1	Wheat	nucleus	58.63	60.24
TraesCS2B01G469800.1	Wheat	nucleus	58.63	60.24
Zm00001d051509_P001	Maize	nucleus	58.63	59.34
Zm00001d017677_P001	Maize	nucleus	63.1	57.92
GSMUA_Achr11P...	Banana	nucleus	46.43	52.0
VIT_02s0012g01450.t01	Wine grape	nucleus	42.86	45.71
KRH45428	Soybean	nucleus	41.07	45.54
KRH75598	Soybean	nucleus	40.77	45.21
TraesCS4B01G304500.1	Wheat	nucleus	39.29	42.72
PGSC0003DMT400045210	Potato	nucleus	41.37	42.12
Solyc08g076820.2.1	Tomato	nucleus	41.07	42.07
TraesCS6B01G346100.1	Wheat	nucleus	38.99	41.07
TraesCS6B01G366200.1	Wheat	nucleus	40.48	39.31
CDY03201	Canola	cytosol	21.13	39.23
TraesCS5B01G245900.1	Wheat	nucleus	39.29	38.37
Bra025007.1-P	Field mustard	nucleus	30.65	37.59
CDY63053	Canola	nucleus	35.12	36.42
CDX77682	Canola	nucleus	35.12	36.42
Bra017533.1-P	Field mustard	nucleus	30.95	35.99
AT5G46690.1	Thale cress	nucleus	34.82	35.78
CDY35175	Canola	nucleus	29.76	34.01
TraesCS4B01G347100.1	Wheat	extracellular	28.87	32.33
TraesCS2B01G141600.1	Wheat	plastid	22.62	31.93
TraesCS1B01G300100.1	Wheat	nucleus	29.76	23.98
TraesCS7B01G232000.1	Wheat	cytosol	22.32	20.6

Protein Annotations

EnsemblPlants:TraesCS6B01G291200.1	EnsemblPlantsGene:TraesCS6B01G291200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF31	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr6B:+:523776674..523779758

Molecular Weight (calculated)

35921.5 Da

IEP (calculated)

6.703

GRAVY (calculated)

-0.149

Length

336 amino acids

Sequence
(BLAST)

001: MALVDALCAS SVDNAALVYS TFNAAGFLFD NAAGFYDGTG IADGPALALQ AADRAPGLSA AGDVAPCLEK QATSSPAPPR RKRRRRARSC KSREETECQR
101: MTHIAVERNR RRQMNEYLVV LRSLMPESYV QRGDQASIVG GAIDFVKELE QQLQSLEAQK RTLAHYQQHK AGCDATPLPA AMPTRASTSG GNACVESTSN
201: CSSSVTEADG ASDAPPFAGF FTYPQYVWRQ SPRDATTLSA DESRAGVADI EVNLVETHAS LRVMAPRRPG QLLRMVAGLQ ALRLTVLHLN VTALDSLLLY
301: SLSLKVEEGC GLTTADDIAA AVHHVLCFIH AEAGAA

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.