Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75598 | Soybean | nucleus | 63.81 | 66.34 |
| KRH45428 | Soybean | nucleus | 63.17 | 65.68 |
| HORVU2Hr1G106030.2 | Barley | cytosol, mitochondrion, nucleus | 20.95 | 64.08 |
| GSMUA_Achr11P... | Banana | mitochondrion | 37.78 | 62.96 |
| Solyc08g076820.2.1 | Tomato | nucleus | 62.86 | 60.37 |
| PGSC0003DMT400045210 | Potato | nucleus | 63.17 | 60.3 |
| GSMUA_Achr11P... | Banana | nucleus | 46.67 | 49.0 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 47.62 | 48.39 |
| AT5G46690.1 | Thale cress | nucleus | 49.52 | 47.71 |
| CDY63053 | Canola | nucleus | 47.3 | 45.99 |
| CDX77682 | Canola | nucleus | 47.3 | 45.99 |
| Bra025007.1-P | Field mustard | nucleus | 40.0 | 45.99 |
| VIT_07s0191g00240.t01 | Wine grape | nucleus | 44.13 | 43.17 |
| TraesCS6B01G291200.1 | Wheat | nucleus | 45.71 | 42.86 |
| VIT_14s0128g00110.t01 | Wine grape | nucleus | 43.17 | 42.11 |
| TraesCS2A01G448800.1 | Wheat | nucleus | 44.13 | 41.99 |
| TraesCS6A01G264200.1 | Wheat | nucleus | 44.76 | 41.96 |
| Bra017533.1-P | Field mustard | nucleus | 38.41 | 41.87 |
| TraesCS6D01G250700.1 | Wheat | nucleus | 46.03 | 41.79 |
| HORVU6Hr1G067000.2 | Barley | nucleus | 45.71 | 41.5 |
| TraesCS2B01G469700.1 | Wheat | nucleus | 42.86 | 41.28 |
| TraesCS2B01G469800.1 | Wheat | nucleus | 42.86 | 41.28 |
| CDY35175 | Canola | nucleus | 38.41 | 41.16 |
| TraesCS2D01G448000.1 | Wheat | nucleus | 43.17 | 41.09 |
| CDY03201 | Canola | cytosol | 23.49 | 40.88 |
| EES07423 | Sorghum | nucleus | 44.44 | 40.11 |
| Zm00001d026046_P001 | Maize | nucleus | 42.54 | 39.88 |
| Zm00001d051509_P001 | Maize | nucleus | 41.59 | 39.46 |
| KXG27015 | Sorghum | cytosol | 42.54 | 39.07 |
| VIT_05s0020g02700.t01 | Wine grape | nucleus | 23.49 | 38.95 |
| Os02t0691500-01 | Rice | nucleus | 44.76 | 37.8 |
| Zm00001d017677_P001 | Maize | nucleus | 43.81 | 37.7 |
| Zm00001d002492_P001 | Maize | mitochondrion | 20.95 | 37.5 |
| KXG27016 | Sorghum | cytosol, nucleus, plastid | 34.92 | 31.79 |
| VIT_15s0048g02510.t01 | Wine grape | nucleus | 34.29 | 29.92 |
| VIT_05s0029g00050.t01 | Wine grape | nucleus | 33.33 | 26.45 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 27.62 | 25.74 |
Protein Annotations
| EntrezGene:100248894 | wikigene:100248894 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CCB57892 | ProteinID:CCB57892.1 |
| ncoils:Coil | UniProt:F6HT82 | EMBL:FN596247 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100248894 | wikigene:LOC100248894 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF31 | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:TC63517 | UniParc:UPI00015C8E10 | ArrayExpress:VIT_02s0012g01450 | EnsemblPlantsGene:VIT_02s0012g01450 | EnsemblPlants:VIT_02s0012g01450.t01 | unigene:Vvi.15939 |
| RefSeq:XP_002278824 | RefSeq:XP_002278824.1 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2:-:7638638..7641188
Molecular Weight (calculated)
35033.1 Da
IEP (calculated)
8.227
GRAVY (calculated)
-0.323
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEALSSND LLNFIIYETI SATPYTCHAP LEAGFSLENP LKPQDLGGAL DTPSTVMDPR CSMGPETSNR KQNLAVQGRK KRRRRARVCK NKEEAETQRM
101: THIAVERNRR RQMNEHLAIL RSLMPESYVQ RGDQASIVGG AIEFVKELEH LLQSLEARKH KMVQGVRENV DDSSSSSSSS TGTGTGTGIT ANKFMPPPFS
201: QFFVYPQYTW SQMPNKYTSK SKAAVADIEV TLIETHANLR ILSHKSPRLL SKMVTGFQTL YLTILHLNVT TVDPLVLYSI SAKVEEGCQL TSVDDIAGAV
301: HHMLRIIEEE AAVLC
101: THIAVERNRR RQMNEHLAIL RSLMPESYVQ RGDQASIVGG AIEFVKELEH LLQSLEARKH KMVQGVRENV DDSSSSSSSS TGTGTGTGIT ANKFMPPPFS
201: QFFVYPQYTW SQMPNKYTSK SKAAVADIEV TLIETHANLR ILSHKSPRLL SKMVTGFQTL YLTILHLNVT TVDPLVLYSI SAKVEEGCQL TSVDDIAGAV
301: HHMLRIIEEE AAVLC
001: MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPLPENDVI ISKNTISEIS NQEPPPQRQP PATNRGKKRR RRKPRVCKNE EEAENQRMTH IAVERNRRRQ
101: MNQHLSVLRS LMPQPFAHKG DQASIVGGAI DFIKELEHKL LSLEAQKHHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL SQFFLHSYDP SQENRNGSTS
201: SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTLATTKPP QLSKLVASLQ SLSLSILHLS VTTLDNYAIY SISAKVEESC QLSSVDDIAG AVHHMLSIIE
301: EEPFCCSSMS ELPFDFSLNH SNVTHSL
101: MNQHLSVLRS LMPQPFAHKG DQASIVGGAI DFIKELEHKL LSLEAQKHHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL SQFFLHSYDP SQENRNGSTS
201: SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTLATTKPP QLSKLVASLQ SLSLSILHLS VTTLDNYAIY SISAKVEESC QLSSVDDIAG AVHHMLSIIE
301: EEPFCCSSMS ELPFDFSLNH SNVTHSL
Arabidopsis Description
BHLH71Transcription factor bHLH71 [Source:UniProtKB/Swiss-Prot;Acc:Q56XR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.