Factsheet for VIT_05s0020g02700.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080050.2.1	Tomato	nucleus	83.16	81.03
KRH20902	Soybean	cytosol	79.47	79.06
KRH11385	Soybean	cytosol	78.95	78.53
GSMUA_Achr7P21110_001	Banana	nucleus	77.37	76.56
GSMUA_Achr7P21190_001	Banana	nucleus	77.37	74.24
AT3G06120.1	Thale cress	nucleus	71.05	66.83
Bra020775.1-P	Field mustard	nucleus	68.42	64.68
Bra040234.1-P	Field mustard	nucleus	68.42	64.68
CDY18843	Canola	nucleus	68.42	64.68
CDY24717	Canola	nucleus	68.42	64.68
CDY05233	Canola	nucleus	67.89	63.24
Bra001183.1-P	Field mustard	nucleus	68.42	62.8
CDY08066	Canola	nucleus	68.42	62.8
CDY58338	Canola	nucleus	68.42	62.8
Zm00001d009778_P001	Maize	nucleus	70.0	60.73
KXG22733	Sorghum	nucleus	71.58	57.14
TraesCS2A01G120700.1	Wheat	nucleus	64.74	56.94
TraesCS2D01G122800.1	Wheat	nucleus	64.21	56.74
Os05t0597000-00	Rice	nucleus	62.63	52.42
HORVU2Hr1G020990.1	Barley	nucleus	65.26	52.1
TraesCS2B01G141600.1	Wheat	plastid	64.74	51.68
VIT_16s0050g02500.t01	Wine grape	nucleus	58.95	33.14
VIT_18s0001g06650.t01	Wine grape	nucleus	41.05	25.16
VIT_07s0191g00240.t01	Wine grape	nucleus	40.53	23.91
VIT_02s0012g01450.t01	Wine grape	nucleus	38.95	23.49
VIT_05s0029g00050.t01	Wine grape	nucleus	47.37	22.67
VIT_15s0048g02510.t01	Wine grape	nucleus	42.63	22.44
VIT_14s0128g00110.t01	Wine grape	nucleus	37.37	21.98

Protein Annotations

EntrezGene:100256370	wikigene:100256370	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CBI26186	ProteinID:CBI26186.3
UniProt:D7T6R5	EMBL:FN595749	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009913	GO:GO:0009987	GO:GO:0010374	GO:GO:0030154	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100256370	wikigene:LOC100256370	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR45509	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00015C818C	ArrayExpress:VIT_05s0020g02700	EnsemblPlantsGene:VIT_05s0020g02700
EnsemblPlants:VIT_05s0020g02700.t01	RefSeq:XP_002277678	RefSeq:XP_002277678.1	InterPro:bHLH_dom	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:4441484..4442745

Molecular Weight (calculated)

21334.0 Da

IEP (calculated)

8.643

GRAVY (calculated)

-0.127

Length

190 amino acids

Sequence
(BLAST)

001: MSHIAVERNR RRQMNEHLKV LRSLTPCFYI KRGDQASIIG GVIEFIKELH QVLQSLESKK RRKSLSPSPG PSPRPLQLTS QPDTPFGLEN FKELGACCNS
101: SVADVEAKIS GSNVILRIIS RRIPGQIVKI INVLEKFSFE VLHLNISSME ETVLYSSVIK IGLECQLSVE ELALEVQQSF RSDAVYANEI

Best Arabidopsis Sequence Match ( AT3G06120.1 )
(BLAST)

001: MSHIAVERNR RRQMNEHLKS LRSLTPCFYI KRGDQASIIG GVIEFIKELQ QLVQVLESKK RRKTLNRPSF PYDHQTIEPS SLGAATTRVP FSRIENVMTT
101: STFKEVGACC NSPHANVEAK ISGSNVVLRV VSRRIVGQLV KIISVLEKLS FQVLHLNISS MEETVLYFFV VKIGLECHLS LEELTLEVQK SFVSDEVIVS
201: TN

Arabidopsis Description

MUTETranscription factor MUTE [Source:UniProtKB/Swiss-Prot;Acc:Q9M8K6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.