Factsheet for TraesCS2D01G122800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G120700.1	Wheat	nucleus	99.07	98.61
TraesCS2B01G141600.1	Wheat	plastid	96.28	86.97
HORVU2Hr1G020990.1	Barley	nucleus	94.88	85.71
GSMUA_Achr7P21110_001	Banana	nucleus	60.0	67.19
Zm00001d009778_P001	Maize	nucleus	67.44	66.21
GSMUA_Achr7P21190_001	Banana	nucleus	60.0	65.15
VIT_05s0020g02700.t01	Wine grape	nucleus	56.74	64.21
KXG22733	Sorghum	nucleus	68.84	62.18
Solyc01g080050.2.1	Tomato	nucleus	56.28	62.05
Os05t0597000-00	Rice	nucleus	64.65	61.23
KRH20902	Soybean	cytosol	53.02	59.69
KRH11385	Soybean	cytosol	52.56	59.16
AT3G06120.1	Thale cress	nucleus	47.44	50.49
CDY18843	Canola	nucleus	46.98	50.25
Bra040234.1-P	Field mustard	nucleus	46.98	50.25
CDY58338	Canola	nucleus	47.91	49.76
CDY08066	Canola	nucleus	47.91	49.76
Bra001183.1-P	Field mustard	nucleus	47.91	49.76
CDY05233	Canola	nucleus	46.05	48.53
CDY24717	Canola	nucleus	45.12	48.26
Bra020775.1-P	Field mustard	nucleus	45.12	48.26
TraesCS7D01G327900.1	Wheat	nucleus	42.79	25.27
TraesCS4D01G302700.1	Wheat	nucleus	32.56	22.58
TraesCS6D01G294900.1	Wheat	nucleus	33.02	22.26
TraesCS4D01G342000.1	Wheat	extracellular	31.16	22.11
TraesCS2D01G448000.1	Wheat	nucleus	32.56	21.15
TraesCS6D01G315200.1	Wheat	nucleus	33.02	20.76
TraesCS6D01G250700.1	Wheat	nucleus	33.49	20.75
TraesCS5D01G255100.1	Wheat	nucleus	32.09	20.54
TraesCS1D01G289400.1	Wheat	nucleus	39.07	20.05

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009913	GO:GO:0009987	GO:GO:0010374	GO:GO:0030154	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR45509	SMART:SM00353
SUPFAM:SSF47459	EnsemblPlantsGene:TraesCS2D01G122800	EnsemblPlants:TraesCS2D01G122800.1	InterPro:bHLH_dom	TIGR:cd00083	SEG:seg

Description

No Description!

Coordinates

chr2D:+:71682622..71683389

Molecular Weight (calculated)

23053.8 Da

IEP (calculated)

7.445

GRAVY (calculated)

0.069

Length

215 amino acids

Sequence
(BLAST)

001: MSHIAVERNR RRQMNDHLKV LRALTPAFYI KRCDQASIIG GAIEFIRELH TVLDALEAKK KRRLCSPTPS PRSLLTCSTP TSAGGSASDV SPNSNGSSGG
101: SCIVPPGIGG AAVKELAACC NSPAADVEAR ISGANVLLRT LSGRIPAQAA RIVALLESLH LEVLHVNIST MDDTVLHSFV LKIGLECQLS VEDVAFEVQQ
201: TFCYHQELDY SSMAI

Best Arabidopsis Sequence Match ( AT3G06120.1 )
(BLAST)

001: MSHIAVERNR RRQMNEHLKS LRSLTPCFYI KRGDQASIIG GVIEFIKELQ QLVQVLESKK RRKTLNRPSF PYDHQTIEPS SLGAATTRVP FSRIENVMTT
101: STFKEVGACC NSPHANVEAK ISGSNVVLRV VSRRIVGQLV KIISVLEKLS FQVLHLNISS MEETVLYFFV VKIGLECHLS LEELTLEVQK SFVSDEVIVS
201: TN

Arabidopsis Description

MUTETranscription factor MUTE [Source:UniProtKB/Swiss-Prot;Acc:Q9M8K6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.