Factsheet for TraesCS5D01G255100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G248200.1	Wheat	nucleus	94.05	91.59
TraesCS5B01G245900.1	Wheat	nucleus	91.96	89.83
Os09t0468700-00	Rice	nucleus	73.51	70.37
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	36.31	65.59
Zm00001d020790_P001	Maize	nucleus	63.99	64.76
HORVU5Hr1G070000.3	Barley	nucleus, plastid	89.58	63.77
EER96894	Sorghum	nucleus	63.69	63.31
Zm00001d005939_P001	Maize	nucleus	62.5	63.06
GSMUA_Achr9P15000_001	Banana	mitochondrion	35.42	59.8
TraesCS6D01G315200.1	Wheat	nucleus	54.46	53.51
TraesCS4D01G302700.1	Wheat	nucleus	45.24	49.03
VIT_07s0191g00240.t01	Wine grape	nucleus	45.24	47.2
GSMUA_Achr5P05450_001	Banana	nucleus	40.18	47.04
Solyc11g010340.1.1	Tomato	nucleus	40.77	45.97
TraesCS6D01G294900.1	Wheat	nucleus	40.77	42.95
PGSC0003DMT400041644	Potato	nucleus	28.87	40.93
TraesCS2D01G448000.1	Wheat	nucleus	38.69	39.27
TraesCS6D01G250700.1	Wheat	nucleus	38.69	37.46
CDY37820	Canola	nucleus	23.51	36.24
Bra031865.1-P	Field mustard	nucleus	22.92	35.32
CDY33966	Canola	nucleus	29.17	32.45
AT5G65320.1	Thale cress	nucleus	28.57	32.43
TraesCS2D01G122800.1	Wheat	nucleus	20.54	32.09
TraesCS4D01G342000.1	Wheat	extracellular	27.38	30.36
TraesCS1D01G289400.1	Wheat	nucleus	28.57	22.91
TraesCS7D01G327900.1	Wheat	nucleus	21.73	20.05

Protein Annotations

EnsemblPlants:TraesCS5D01G255100.1	EnsemblPlantsGene:TraesCS5D01G255100	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr5D:+:361606365..361607910

Molecular Weight (calculated)

35698.2 Da

IEP (calculated)

5.103

GRAVY (calculated)

-0.252

Length

336 amino acids

Sequence
(BLAST)

001: MALEAAVLSR AAAGLFGRCA MAGAGGAWNG LFGGSEGLAG LDGGDWDAAV AAACSSMLLP PAAFQDLDIS ATAPQEESGG RGEMSAAGVG QDDAAPVTAA
101: ATGRRKRRRT RTAKNSEEVE SQRMTHIAVE RNRRKQMNEY LAALRSLMPP SYALRGDQAS IVGGAINFVK ELEQLLQTLE TQRQTRERAA VDGGEAQPPL
201: FANFFTFPQY SMSVTSAPAP PPANNDEGAD GCAEAEASGS KPSAVADVEV TMVESHANLR MLSRRRPRQL LRLLVGLQGH RLTVLHLNMS SASHMVLYSL
301: SLKVEDDCQL TSVDEIATAA HQIIEKIQEE QDFTSA

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.