Factsheet for HORVU5Hr1G070000.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G248200.1	Wheat	nucleus	66.1	90.43
TraesCS5D01G255100.1	Wheat	nucleus	63.77	89.58
TraesCS5B01G245900.1	Wheat	nucleus	64.62	88.66
Os09t0468700-00	Rice	nucleus	51.48	69.23
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	25.42	64.52
EER96894	Sorghum	nucleus	46.19	64.5
Zm00001d020790_P001	Maize	nucleus	44.92	63.86
Zm00001d005939_P001	Maize	nucleus	44.28	62.76
HORVU2Hr1G106030.2	Barley	cytosol, mitochondrion, nucleus	13.14	60.19
GSMUA_Achr9P15000_001	Banana	mitochondrion	25.21	59.8
HORVU6Hr1G081120.4	Barley	nucleus	38.35	52.31
GSMUA_Achr5P05450_001	Banana	nucleus	28.6	47.04
VIT_07s0191g00240.t01	Wine grape	nucleus	31.99	46.89
Solyc11g010340.1.1	Tomato	nucleus	28.81	45.64
PGSC0003DMT400041644	Potato	nucleus	20.55	40.93
HORVU4Hr1G078270.2	Barley	plastid	36.44	38.91
HORVU6Hr1G067000.2	Barley	nucleus	28.18	38.33
CDY37820	Canola	nucleus	16.53	35.78
Bra031865.1-P	Field mustard	nucleus	16.1	34.86
AT5G65320.1	Thale cress	nucleus	20.76	33.11
CDY33966	Canola	nucleus	20.55	32.12
HORVU2Hr1G020990.1	Barley	nucleus	15.89	31.51
HORVU4Hr1G084850.2	Barley	extracellular	19.92	31.02
HORVU1Hr1G071330.3	Barley	nucleus	20.76	22.48
HORVU7Hr1G079250.1	Barley	cytosol	15.47	20.0

Protein Annotations

EnsemblPlants:HORVU5Hr1G070000.3	EnsemblPlantsGene:HORVU5Hr1G070000	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000B4693C2	UniProt:A0A287RP09	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chrchr5H:-:526730578..526733459

Molecular Weight (calculated)

50341.9 Da

IEP (calculated)

7.884

GRAVY (calculated)

-0.290

Length

472 amino acids

Sequence
(BLAST)

001: LSLHVRLSHE GMMTFPATRY RDPLRPNHGL ITRKSATFQA LPSIKIILYS TVLPPPLVTG SPQHASPSST PFPKHTLAPF ASRVHLHPRP PTVANLPWRR
101: PSQLVVLPFR PWESGEGSSG AGRGMALEAA VFSRAAAARL FGRCAMAGAG GAWNGLFGGG EGLAGLDGGD WDADAVAAAC SSMLLPHAAF QELDISVPGA
201: ATTPPQEGTG VPGAELNAAG VGEDNATPMT AAATGRRKRR RTRTAKNSEE VESQRMTHIA VERNRRKQMN EYLAALRSLM PPSYAQKGDQ ASIVGGAINF
301: VKELEQLLQT LETHRQARER AAAVDGGEAQ PPPFANFFTF PQYSMSATSA PAPPPPANND EGADGGAEAE ASGSKPSAVA DVEVTMVESH ANLRMLSRRR
401: PRQLLRLLVG LQGHRLTVLH LNMSSAGHMV LYSLSLKQVE DDSQLTSVDE IATVAHQIVE KIQEEEELTA AA

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.