Factsheet for HORVU1Hr1G071330.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G001310.16
HORVU2Hr1G106030.2	nucleus
HORVU4Hr1G061760.1
HORVU4Hr1G080890.1	nucleus
HORVU4Hr1G084680.1
HORVU5Hr1G066530.2
HORVU5Hr1G109710.2
HORVU5Hr1G114640.1
HORVU5Hr1G114660.1
HORVU6Hr1G067000.2	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	HORVU2Hr1G001310.16	AT1G19980.1	21798944
AT3G24140.1	HORVU4Hr1G084680.1	AT1G62990.1	21798944
AT3G24140.1	HORVU5Hr1G114640.1	AT1G73790.1	21798944
AT3G24140.1	HORVU5Hr1G114660.1	AT1G73790.1	21798944
AT3G24140.1	HORVU4Hr1G061760.1	AT3G25710.1	21798944
AT3G24140.1	HORVU5Hr1G066530.2	AT3G25710.1	21798944
AT3G24140.1	HORVU5Hr1G109710.2	AT4G02770.1	21798944
AT3G24140.1	HORVU2Hr1G106030.2	AT5G46690.1	17088607
AT3G24140.1	HORVU6Hr1G067000.2	AT5G46690.1	17088607
AT3G24140.1	HORVU2Hr1G106030.2	AT5G46690.1	21798944
AT3G24140.1	HORVU6Hr1G067000.2	AT5G46690.1	21798944
AT3G24140.1	HORVU4Hr1G080890.1	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G300100.1	Wheat	nucleus	91.28	95.44
TraesCS1A01G290800.1	Wheat	nucleus	90.83	94.29
TraesCS1D01G289400.1	Wheat	nucleus	90.6	94.27
Os05t0586300-00	Rice	nucleus	62.61	70.54
Zm00001d009715_P001	Maize	nucleus	61.01	63.64
GSMUA_Achr8P28400_001	Banana	nucleus	28.44	62.31
GSMUA_Achr2P06030_001	Banana	nucleus	44.27	60.5
KXG22636	Sorghum	nucleus	61.24	58.42
HORVU2Hr1G106030.2	Barley	cytosol, mitochondrion, nucleus	13.53	57.28
Solyc09g091760.1.1	Tomato	nucleus	29.82	52.63
VIT_05s0029g00050.t01	Wine grape	nucleus	45.41	49.87
Solyc05g053660.1.1	Tomato	nucleus	42.66	48.56
Bra028357.1-P	Field mustard	nucleus	43.81	47.75
PGSC0003DMT400040761	Potato	nucleus	42.43	47.44
Bra001929.1-P	Field mustard	nucleus	43.81	47.16
CDX92996	Canola	nucleus	43.81	47.16
CDX94841	Canola	nucleus	43.58	46.57
CDX85167	Canola	nucleus	41.28	46.27
KRH75571	Soybean	nucleus	45.41	46.15
CDX77460	Canola	nucleus	37.39	45.79
AT3G24140.1	Thale cress	nucleus	43.35	45.65
PGSC0003DMT400076223	Potato	nucleus	29.82	45.61
KRH71094	Soybean	nucleus	45.64	44.62
Bra028351.1-P	Field mustard	nucleus	35.55	43.06
CDY18083	Canola	nucleus	36.47	41.41
CDY64587	Canola	nucleus	34.63	40.7
HORVU2Hr1G020990.1	Barley	nucleus	20.41	37.4
HORVU6Hr1G067000.2	Barley	nucleus	23.17	29.11
HORVU6Hr1G081120.4	Barley	nucleus	21.79	27.46
HORVU4Hr1G084850.2	Barley	extracellular	17.66	25.41
HORVU7Hr1G079250.1	Barley	cytosol	21.1	25.21
HORVU4Hr1G078270.2	Barley	plastid	22.94	22.62
HORVU5Hr1G070000.3	Barley	nucleus, plastid	22.48	20.76

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A287G578	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791
GO:GO:0009987	GO:GO:0010052	GO:GO:0010377	GO:GO:0010444	GO:GO:0016043	GO:GO:0019538
GO:GO:0030154	GO:GO:0045597	GO:GO:0045893	GO:GO:0046983	GO:GO:0051782	GO:GO:0061086
InterPro:HLH_DNA-bd_sf	EnsemblPlantsGene:HORVU1Hr1G071330	EnsemblPlants:HORVU1Hr1G071330.3	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF46	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000B46E4EF
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:492775091..492778160

Molecular Weight (calculated)

47357.5 Da

IEP (calculated)

6.001

GRAVY (calculated)

-0.557

Length

436 amino acids

Sequence
(BLAST)

001: MHACARREFI KATSSRSWKN RGSSHQLDTF AQLDGGAAPE EPMGGGGAGA EMVDYMLGQT TPLPPGGPHG QVSLDKLSFS DVLQFADFGP RLALNQPSAD
101: HDDARDDDEE DSYFFRFQSQ LSGSDEPDPR GRAGIHHAAE QEGSKTPDGS GGPHDHGGGV SESTTLVQQS DGGGRVGQKA GGEQVKTGRR KRPRSTKTSE
201: EVESQRMTHI AVERNRRRQM NDYLRVLRSL MPGSYVQRGD QASIIGGAIE FIRELEQLIQ CLESQKRRRL YGDTPRPVAD ASAPVVPATS IHEPPPQGHE
301: APPFYVSPSL SFPGAANGDG AAAAKVMIDL DTCSGGGLRE EVAENKSSLA DIEVRVLGED AVIKVLSRRR PEQLIKTIAV LEEMHMSILH TNITTIEQTV
401: LYSFNVKVRT HARFTAEEIV GAVHQILSFI DVNYTL

Best Arabidopsis Sequence Match ( AT3G24140.1 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NISGSSNLGN IVFT

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.