Factsheet for HORVU4Hr1G078270.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G304500.1	Wheat	nucleus	66.29	94.82
TraesCS4A01G404700.1	Wheat	nucleus	66.06	94.19
TraesCS4D01G302700.1	Wheat	nucleus	66.06	94.19
Os03t0188400-01	Rice	nucleus	48.87	65.65
Zm00001d027987_P001	Maize	nucleus	45.02	60.12
HORVU2Hr1G106030.2	Barley	cytosol, mitochondrion, nucleus	13.8	59.22
EER95359	Sorghum	nucleus	47.74	59.1
Zm00001d048229_P001	Maize	nucleus	46.61	57.7
GSMUA_Achr2P22310_001	Banana	nucleus	30.32	55.37
GSMUA_Achr6P10290_001	Banana	nucleus	36.43	55.33
GSMUA_Achr10P...	Banana	mitochondrion	24.43	54.55
Solyc11g010340.1.1	Tomato	nucleus	30.77	45.64
VIT_07s0191g00240.t01	Wine grape	nucleus	33.03	45.34
PGSC0003DMT400041644	Potato	nucleus	22.4	41.77
HORVU6Hr1G081120.4	Barley	nucleus	31.9	40.75
HORVU6Hr1G067000.2	Barley	nucleus	30.54	38.9
CDY37820	Canola	nucleus	18.55	37.61
Bra031865.1-P	Field mustard	nucleus	18.1	36.7
HORVU5Hr1G070000.3	Barley	nucleus, plastid	38.91	36.44
CDY33966	Canola	nucleus	23.08	33.77
AT5G65320.1	Thale cress	nucleus	22.4	33.45
HORVU2Hr1G020990.1	Barley	nucleus	16.29	30.25
HORVU4Hr1G084850.2	Barley	extracellular	20.36	29.7
HORVU1Hr1G071330.3	Barley	nucleus	22.62	22.94
HORVU7Hr1G079250.1	Barley	cytosol	15.84	19.18

Protein Annotations

EnsemblPlants:HORVU4Hr1G078270.2	EnsemblPlantsGene:HORVU4Hr1G078270	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF24	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000B462FCB	UniProt:A0A287PSN5	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chrchr4H:-:607021915..607024644

Molecular Weight (calculated)

47556.5 Da

IEP (calculated)

9.441

GRAVY (calculated)

-0.357

Length

442 amino acids

Sequence
(BLAST)

001: WAKVFSTSSS SIFSSPRSPP IPFPSLALPD SVTQTQTVGP GASPLIPSPK WQRSTPPTPS RAHGDRDSLR PRAPYKTRAA PRHPPSLPPH TPISTHPCRC
101: RRVLCVSACL LACQSCPSPG VNLSPVGARM ALEAVVLAQG HFGYGLQAPG LAPWCDMLGA GGFLEDDWDQ QLLAAPVAPN AEDQWEPVSS WDQSEASSEG
201: KAAAPPEPAT AAAATGRRKR RRAKIVKNKE EVESQRRTHI AVERNRRRQM NEYLAALRLI MPQSYAQRGD QASIVGGAIN YVKELEQLLQ SLEVQKSVKN
301: RTGRSPFASS FTFPQYSASC NITQATTASD AGSGADSSGI KSEAGVADIE VTMVEGHASL KVLARRRPKQ LLRLVAGLQQ LRIPALHLNV TTVDAMVLYS
401: FSLKVEDGSK LGSVEDIAAA VHEILGRIQR EEEEAGRLSS SS

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.