Factsheet for HORVU6Hr1G081120.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G315200.1	Wheat	nucleus	78.9	79.82
TraesCS6A01G335500.1	Wheat	nucleus	80.64	79.49
TraesCS6B01G366200.1	Wheat	nucleus	78.9	78.9
Zm00001d031260_P001	Maize	nucleus	41.04	65.74
HORVU2Hr1G106030.2	Barley	cytosol, mitochondrion, nucleus	19.36	65.05
Os08t0483900-01	Rice	nucleus	58.67	55.92
VIT_07s0191g00240.t01	Wine grape	nucleus	39.02	41.93
Solyc11g010340.1.1	Tomato	nucleus	35.84	41.61
HORVU5Hr1G070000.3	Barley	nucleus, plastid	52.31	38.35
HORVU6Hr1G067000.2	Barley	nucleus	37.57	37.46
PGSC0003DMT400041644	Potato	nucleus	25.14	36.71
CDY37820	Canola	nucleus	21.39	33.95
Bra031865.1-P	Field mustard	nucleus	21.1	33.49
HORVU4Hr1G078270.2	Barley	plastid	40.75	31.9
CDY33966	Canola	nucleus	27.75	31.79
AT5G65320.1	Thale cress	nucleus	26.88	31.42
HORVU2Hr1G020990.1	Barley	nucleus	21.1	30.67
HORVU4Hr1G084850.2	Barley	extracellular	25.43	29.04
HORVU1Hr1G071330.3	Barley	nucleus	27.46	21.79
HORVU7Hr1G079250.1	Barley	cytosol	20.81	19.73

Protein Annotations

EnsemblPlants:HORVU6Hr1G081120.4	EnsemblPlantsGene:HORVU6Hr1G081120	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR11969
PANTHER:PTHR11969:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000B482DB0	UniProt:A0A287UWC5	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:544386904..544388122

Molecular Weight (calculated)

36192.9 Da

IEP (calculated)

8.053

GRAVY (calculated)

-0.250

Length

346 amino acids

Sequence
(BLAST)

001: MALEAVVFSK GFFGCCAMAA EAGGGGGGGV WGGNGHGHSG GMELDGSNSD CAAAAASISV MIPCTEVPEG SSSLPALPPP GHGGDRGDAD GADGAAAAAG
101: AAGRRKRRRA RSVKNIEEAE SQRMTHIAVE RNRRRQMNEY LAVLRSLMPA SYVHRGDQAS IIGGAINYVK ELEQLVQSLE AHRHAHHSDD RPASGDVSPS
201: VAPFADFFTF PQYTMSVRHA PATPAADASA DDGGGNAEDD ATPGSKQSAV ADIEVTIVES HASLRVLSRR RPRQLLRIMA GLQGHRLAVL HLNATSAGHM
301: ALYCLSLKQV TPKQLTGLVF RAPCPGRPLQ NITPPRVSPQ RCSCII

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.