Factsheet for TraesCS6D01G315200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G366200.1	Wheat	nucleus	93.27	92.2
TraesCS6A01G335500.1	Wheat	nucleus	93.86	91.45
HORVU6Hr1G081120.4	Barley	nucleus	79.82	78.9
Zm00001d031260_P001	Maize	nucleus	42.4	67.13
Os08t0483900-01	Rice	nucleus	64.04	60.33
TraesCS5D01G255100.1	Wheat	nucleus	53.51	54.46
TraesCS4D01G302700.1	Wheat	nucleus	46.49	51.29
VIT_07s0191g00240.t01	Wine grape	nucleus	42.4	45.03
Solyc11g010340.1.1	Tomato	nucleus	38.89	44.63
TraesCS6D01G294900.1	Wheat	nucleus	41.52	44.51
TraesCS2D01G448000.1	Wheat	nucleus	39.77	41.09
TraesCS6D01G250700.1	Wheat	nucleus	40.64	40.06
PGSC0003DMT400041644	Potato	nucleus	27.49	39.66
CDY37820	Canola	nucleus	23.39	36.7
Bra031865.1-P	Field mustard	nucleus	22.81	35.78
CDY33966	Canola	nucleus	29.53	33.44
AT5G65320.1	Thale cress	nucleus	28.66	33.11
TraesCS2D01G122800.1	Wheat	nucleus	20.76	33.02
TraesCS4D01G342000.1	Wheat	extracellular	26.32	29.7
TraesCS1D01G289400.1	Wheat	nucleus	29.53	24.11
TraesCS7D01G327900.1	Wheat	nucleus	22.22	20.88

Protein Annotations

EnsemblPlants:TraesCS6D01G315200.1	EnsemblPlantsGene:TraesCS6D01G315200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR11969
PANTHER:PTHR11969:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:423675186..423676707

Molecular Weight (calculated)

35922.2 Da

IEP (calculated)

6.391

GRAVY (calculated)

-0.297

Length

342 amino acids

Sequence
(BLAST)

001: MALEAVVFSK GFFGRCAMAA EGVGGGGGVW GGNGHGHGGG MELDGSNAHC GAAVASTEAP EGSSSLPALP PPGHGSDPGG ADDGAVDAAS ASGAAGRRKR
101: RRARSVKNIE EAESQRMTHI AVERNRRKQM NEYLGVLRSL MPASYVHRGD QASIIGGAIN YVKELEQLVQ SLEAHRHARL RDDCPVSGDV DSAAAVPFLD
201: FFTFPQYTMS VRHAPATPAA GALADDGGGN AADDDTTSGS KQSAVADIEV TIVESHASLK VLSRRRPTQL LRIVAGLQGH RLAVLHLNAT SAGHMALYCL
301: SLKVEDDCRL SSVADIAAAV HRILETIERE EEEERRQQQS CT

Best Arabidopsis Sequence Match ( AT1G22490.2 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVRTF STSHHYFVCF WGNHEIKVSN
301: DCVCGAYGFT LLIYFFVSYC WGEILD

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.