Factsheet for TraesCS4D01G302700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G404700.1	Wheat	nucleus	97.74	97.74
TraesCS4B01G304500.1	Wheat	nucleus	96.77	97.09
Os03t0188400-01	Rice	nucleus	70.65	66.57
HORVU4Hr1G078270.2	Barley	plastid	94.19	66.06
Zm00001d027987_P001	Maize	nucleus	64.52	60.42
EER95359	Sorghum	nucleus	68.71	59.66
Zm00001d048229_P001	Maize	nucleus	66.45	57.7
GSMUA_Achr10P...	Banana	mitochondrion	36.45	57.07
GSMUA_Achr2P22310_001	Banana	nucleus	44.52	57.02
GSMUA_Achr6P10290_001	Banana	nucleus	53.23	56.7
Solyc11g010340.1.1	Tomato	nucleus	45.48	47.32
TraesCS6D01G315200.1	Wheat	nucleus	51.29	46.49
VIT_07s0191g00240.t01	Wine grape	nucleus	47.74	45.96
TraesCS5D01G255100.1	Wheat	nucleus	49.03	45.24
TraesCS6D01G294900.1	Wheat	nucleus	45.48	44.2
PGSC0003DMT400041644	Potato	nucleus	32.9	43.04
TraesCS2D01G448000.1	Wheat	nucleus	41.94	39.27
TraesCS6D01G250700.1	Wheat	nucleus	43.23	38.62
CDY37820	Canola	nucleus	26.45	37.61
Bra031865.1-P	Field mustard	nucleus	25.81	36.7
CDY33966	Canola	nucleus	32.9	33.77
AT5G65320.1	Thale cress	nucleus	31.94	33.45
TraesCS2D01G122800.1	Wheat	nucleus	22.58	32.56
TraesCS4D01G342000.1	Wheat	extracellular	29.68	30.36
TraesCS1D01G289400.1	Wheat	nucleus	32.26	23.87
TraesCS7D01G327900.1	Wheat	nucleus	22.9	19.51

Protein Annotations

EnsemblPlants:TraesCS4D01G302700.1	EnsemblPlantsGene:TraesCS4D01G302700	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF24	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr4D:+:470506707..470508796

Molecular Weight (calculated)

33681.6 Da

IEP (calculated)

6.378

GRAVY (calculated)

-0.453

Length

310 amino acids

Sequence
(BLAST)

001: MALEAVEFSQ GHFGYGQAPG LGPWCDMVGA GGFFEDCWDQ QLLAAPVAPN AEDQWEPVSS WDQSEASSEG KAAAPEPAMA AAATGRRKRR RTKIVKNKEE
101: VESQRRTHIA VERNRRRQMN EYLAALRSLM PQSYAQRGDQ ASIVGGAINY VKELEQLLQS LEVQKSVKNR TGRSPFASSF TFPQYSTSCN ATQATASDGG
201: SGADSSGDKS EAGVADIEVT MVEGHASLKV LSRRRPKQLL RLVAGLQQLR IPPLHLNVTT VDAMVLYSFS LKVEDGSKLG SVEDIAAAVH EILARIQREE
301: EEAGRLSSSS

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.