Factsheet for VIT_07s0191g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	35.71	61.83
GSMUA_Achr9P15000_001	Banana	mitochondrion	37.58	60.8
VIT_18s0001g06650.t01	Wine grape	nucleus	54.66	56.77
GSMUA_Achr5P17900_001	Banana	nucleus	48.76	55.67
GSMUA_Achr10P...	Banana	mitochondrion	33.85	55.05
GSMUA_Achr6P10290_001	Banana	nucleus	49.69	54.98
Solyc11g010340.1.1	Tomato	nucleus	50.0	54.03
GSMUA_Achr2P22310_001	Banana	nucleus	40.37	53.72
Zm00001d031260_P001	Maize	nucleus	36.02	53.7
GSMUA_Achr10P...	Banana	nucleus	51.24	53.4
VIT_14s0128g00110.t01	Wine grape	nucleus	51.55	51.39
Os02t0759000-01	Rice	cytosol	24.22	51.32
GSMUA_Achr8P17650_001	Banana	nucleus	46.89	51.01
PGSC0003DMT400041644	Potato	nucleus	36.96	50.21
GSMUA_Achr5P05450_001	Banana	nucleus	44.72	50.17
TraesCS4B01G304500.1	Wheat	nucleus	46.89	48.87
GSMUA_Achr6P02150_001	Banana	nucleus	51.55	48.12
TraesCS4A01G404700.1	Wheat	nucleus	46.27	48.06
TraesCS4D01G302700.1	Wheat	nucleus	45.96	47.74
Os03t0188400-01	Rice	nucleus	47.83	46.81
Zm00001d020790_P001	Maize	nucleus	48.14	46.69
GSMUA_Achr7P12790_001	Banana	nucleus	47.2	46.48
TraesCS6A01G315700.1	Wheat	nucleus	44.1	46.25
Zm00001d005939_P001	Maize	nucleus	47.83	46.25
Os09t0468700-00	Rice	nucleus	50.31	46.15
EER96894	Sorghum	nucleus	48.45	46.15
Zm00001d027987_P001	Maize	nucleus	46.89	45.62
TraesCS5D01G255100.1	Wheat	nucleus	47.2	45.24
CDY37820	Canola	nucleus	30.43	44.95
TraesCS5A01G248200.1	Wheat	nucleus	47.83	44.64
TraesCS6D01G294900.1	Wheat	nucleus	43.79	44.2
TraesCS5B01G245900.1	Wheat	nucleus	47.2	44.19
VIT_02s0012g01450.t01	Wine grape	nucleus	43.17	44.13
Bra031865.1-P	Field mustard	nucleus	29.81	44.04
TraesCS6B01G346100.1	Wheat	nucleus	43.48	43.89
EER95359	Sorghum	nucleus	48.45	43.7
Os08t0483900-01	Rice	nucleus	48.45	42.98
Os10t0376900-01	Rice	nucleus	43.48	42.68
TraesCS6D01G315200.1	Wheat	nucleus	45.03	42.4
Zm00001d048229_P001	Maize	nucleus	46.89	42.3
TraesCS6B01G366200.1	Wheat	nucleus	45.34	42.2
TraesCS6A01G335500.1	Wheat	nucleus	45.65	41.88
KXG30709	Sorghum	nucleus	44.72	41.14
OQU91887	Sorghum	nucleus	41.3	41.05
AT5G65320.1	Thale cress	nucleus	37.58	40.88
VIT_05s0020g02700.t01	Wine grape	nucleus	23.91	40.53
CDY33966	Canola	nucleus	37.27	39.74
Zm00001d018119_P001	Maize	nucleus	43.17	39.49
Zm00001d052192_P001	Maize	nucleus	42.24	39.42
HORVU6Hr1G081120.4	Barley	nucleus	41.93	39.02
HORVU4Hr1G078270.2	Barley	plastid	45.34	33.03
VIT_15s0048g02510.t01	Wine grape	nucleus	36.34	32.41
HORVU5Hr1G070000.3	Barley	nucleus, plastid	46.89	31.99
VIT_05s0029g00050.t01	Wine grape	nucleus	34.47	27.96
VIT_16s0050g02500.t01	Wine grape	nucleus	29.19	27.81

Protein Annotations

EntrezGene:100260285	wikigene:100260285	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:AM467897	ProteinID:CAN61676
ProteinID:CAN61676.1	ProteinID:CCB57358	ProteinID:CCB57358.1	UniProt:F6HRQ0	EMBL:FN596027	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EntrezGene:LOC100260285	wikigene:LOC100260285	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF26
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000210991A	ArrayExpress:VIT_07s0191g00240	EnsemblPlantsGene:VIT_07s0191g00240	EnsemblPlants:VIT_07s0191g00240.t01
RefSeq:XP_002262854	RefSeq:XP_002262854.2	RefSeq:XP_010652690.1	InterPro:bHLH_dom	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:15041110..15042572

Molecular Weight (calculated)

36182.7 Da

IEP (calculated)

7.325

GRAVY (calculated)

-0.449

Length

322 amino acids

Sequence
(BLAST)

001: MALEAVVFQQ DPFSFGCRDV YAMGGGWSYG FGFEEDKVYT QTQTQTLDAN VDHQQALHGN WESSCSSMVQ HLKEWDANSS STEACTGDGL LAGVTPQPQE
101: PAATSGRRKR RRTRSVKNKE QVENQRMTHI AVERNRRRQM NEHLAVLRSL MPASYVQRGD QASIIGGAIN FVKELEQLLQ PLEAQKLMKQ RSQTDSSTVF
201: SNFFTFPQYS TYSTHYNSSA ATKESMAEKR SAIADVEVTM VETHANIRVL SRTRPKQLFK MVAWLHSVRL TILHLNVTTV DHMVLYSFSA KVEDDCVLSS
301: VNEIATAVYE TVGRIQGEAP LT

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.