CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020790_P001	Maize	nucleus	81.66	83.13
Zm00001d005939_P001	Maize	nucleus	81.07	82.28
Os09t0468700-00	Rice	nucleus	69.53	66.95
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	36.09	65.59
TraesCS5A01G248200.1	Wheat	nucleus	65.09	63.77
TraesCS5D01G255100.1	Wheat	nucleus	63.31	63.69
TraesCS5B01G245900.1	Wheat	nucleus	64.2	63.08
GSMUA_Achr9P15000_001	Banana	mitochondrion	35.8	60.8
VIT_07s0191g00240.t01	Wine grape	nucleus	46.15	48.45
GSMUA_Achr5P05450_001	Banana	nucleus	40.83	48.08
HORVU5Hr1G070000.3	Barley	nucleus, plastid	64.5	46.19
OQU91887	Sorghum	nucleus	44.08	45.99
Solyc11g010340.1.1	Tomato	nucleus	40.24	45.64
EER95359	Sorghum	nucleus	45.86	43.42
KXG30709	Sorghum	nucleus	44.38	42.86
PGSC0003DMT400041644	Potato	nucleus	28.11	40.08
EES07423	Sorghum	nucleus	41.12	39.83
KXG27015	Sorghum	cytosol	39.94	39.36
CDY37820	Canola	nucleus	24.85	38.53
Bra031865.1-P	Field mustard	nucleus	24.56	38.07
AT5G65320.1	Thale cress	nucleus	31.36	35.81
KXG22733	Sorghum	nucleus	25.15	35.71
CDY33966	Canola	nucleus	31.36	35.1
KXG27016	Sorghum	cytosol, nucleus, plastid	34.02	33.24
OQU93358	Sorghum	nucleus	29.88	31.27
KXG22636	Sorghum	nucleus	28.7	21.23
EER88428	Sorghum	nucleus	21.3	18.95
EES06610	Sorghum	nucleus	21.01	17.84

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8063735	UniProt:C5X314	EnsemblPlants:EER96894	ProteinID:EER96894
ProteinID:EER96894.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF28
SMART:SM00353	EnsemblPlantsGene:SORBI_3002G232900	SUPFAM:SSF47459	UniParc:UPI0001A83698	RefSeq:XP_002460373.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:62393508..62395752

Molecular Weight (calculated)

35962.5 Da

IEP (calculated)

5.444

GRAVY (calculated)

-0.323

Length

338 amino acids

Sequence
(BLAST)

001: MALEAALVLS QQQSSSQQGS RFGCGAMAAG GPWSSLLFSG IEEVVEMGGA AGAAGSWNAA ACSPPQLLQE LGDNTAAGAL PAASGRCASG GAGQDAPAPA
101: PGRRKRRRMR PVKNEEEVES QRMIHIAVER NRRKQMNEYL AALRSLMPPA YSQRGDQASI VGGAINFVKE LEQLLQSLEA QRRSSQRPAD DVDPDDAGPF
201: ADFFTFPQYS MCAVVAGAAP ENKNADHREG AGGAEEEASG SKPSAVADVE ATMVESHANL RVLSRRRPRQ LLRLVLGLQG HRLTVLHLNM SSAGHMVLYS
301: FSLKVEDDCQ LTSVDEIAAA AHQIVEKINE EQGCSLLE

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.