CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018119_P001	Maize	nucleus	86.57	86.08
Zm00001d052192_P001	Maize	nucleus	81.71	82.9
Os02t0759000-01	Rice	cytosol	34.0	78.29
TraesCS6A01G315700.1	Wheat	nucleus	60.0	68.4
TraesCS6B01G346100.1	Wheat	nucleus	60.29	66.14
TraesCS6D01G294900.1	Wheat	nucleus	60.0	65.83
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	32.0	60.22
GSMUA_Achr9P15000_001	Banana	mitochondrion	32.29	56.78
GSMUA_Achr5P05450_001	Banana	nucleus	38.86	47.39
Solyc11g010340.1.1	Tomato	nucleus	40.0	46.98
VIT_07s0191g00240.t01	Wine grape	nucleus	41.14	44.72
EER96894	Sorghum	nucleus	42.86	44.38
PGSC0003DMT400041644	Potato	nucleus	29.43	43.46
OQU91887	Sorghum	nucleus	39.71	42.9
EER95359	Sorghum	nucleus	42.29	41.46
KXG27015	Sorghum	cytosol	39.14	39.94
CDY37820	Canola	nucleus	23.43	37.61
Bra031865.1-P	Field mustard	nucleus	22.86	36.7
EES07423	Sorghum	nucleus	36.57	36.68
KXG27016	Sorghum	cytosol, nucleus, plastid	34.86	35.26
CDY33966	Canola	nucleus	30.0	34.77
AT5G65320.1	Thale cress	nucleus	28.29	33.45
KXG22733	Sorghum	nucleus	22.57	33.19
OQU93358	Sorghum	nucleus	26.57	28.79
KXG22636	Sorghum	nucleus	30.29	23.19
EER88428	Sorghum	nucleus	21.71	20.0
EES06610	Sorghum	nucleus	22.29	19.6

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A194YR51	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KXG30709
ProteinID:KXG30709	ProteinID:KXG30709.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF24
SMART:SM00353	EnsemblPlantsGene:SORBI_3004G228400	SUPFAM:SSF47459	UniParc:UPI0002207212	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:57807690..57810439

Molecular Weight (calculated)

37006.9 Da

IEP (calculated)

6.702

GRAVY (calculated)

-0.177

Length

350 amino acids

Sequence
(BLAST)

001: MALEAVVFPK EHLVCTVKAR SASLGCGFHT EELEDKGGEV LQGEAADALL PPGADAGAGT MWEWDAVLCP CSTAPGAVEE CWDVQHQLSV SPPPPAVPSA
101: VAASSSGRGK AAAASARRRR RRPKAVKNTE EMESQRRNHI AVERNRRRQM NEYLSVLRSA MPPSYAQRGD QASIVAGAIN FVKELEQLLQ SLEAQKRRQG
201: GCTEPPPPAA PFAGFFTFPQ YSTTATGVVG SSDSASSGGE QNGGGCAGAG ARRGVADIEV ALAESHANVK VLAPRRPRQL LRMVVALQCL GLTVLHLNVT
301: TTADHLAFYS LSLKMEDECR LSSVDDIAAA VNEILAKISD ECAASHLLAA

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.