CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017677_P001	Maize	nucleus	85.67	81.69
Zm00001d051509_P001	Maize	nucleus	77.36	81.33
TraesCS6A01G264200.1	Wheat	nucleus	63.9	66.37
TraesCS6B01G291200.1	Wheat	nucleus	62.18	64.58
TraesCS6D01G250700.1	Wheat	nucleus	62.75	63.11
HORVU6Hr1G067000.2	Barley	nucleus	62.46	62.82
GSMUA_Achr11P...	Banana	mitochondrion	33.24	61.38
Os02t0691500-01	Rice	nucleus	63.61	59.52
GSMUA_Achr11P...	Banana	nucleus	40.69	47.33
KXG27015	Sorghum	cytosol	46.42	47.23
VIT_02s0012g01450.t01	Wine grape	nucleus	40.11	44.44
KRH75598	Soybean	nucleus	38.4	44.22
KRH45428	Soybean	nucleus	38.4	44.22
Solyc08g076820.2.1	Tomato	nucleus	39.83	42.38
PGSC0003DMT400045210	Potato	nucleus	39.83	42.12
EER96894	Sorghum	nucleus	39.83	41.12
CDY03201	Canola	cytosol	20.92	40.33
KXG27016	Sorghum	cytosol, nucleus, plastid	36.96	37.28
Bra025007.1-P	Field mustard	nucleus	29.23	37.23
CDY63053	Canola	nucleus	34.1	36.73
CDX77682	Canola	nucleus	34.1	36.73
KXG30709	Sorghum	nucleus	36.68	36.57
OQU91887	Sorghum	nucleus	33.81	36.42
AT5G46690.1	Thale cress	nucleus	34.1	36.39
Bra017533.1-P	Field mustard	nucleus	29.23	35.29
CDY35175	Canola	nucleus	29.23	34.69
EER95359	Sorghum	nucleus	34.67	33.89
KXG22733	Sorghum	nucleus	22.06	32.35
OQU93358	Sorghum	nucleus	29.23	31.58
KXG22636	Sorghum	nucleus	29.51	22.54
EES06610	Sorghum	nucleus	21.2	18.59
EER88428	Sorghum	nucleus	20.06	18.42

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8073895	UniProt:C5Y0S0	ncoils:Coil	EnsemblPlants:EES07423
ProteinID:EES07423	ProteinID:EES07423.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11969
PANTHER:PTHR11969:SF31	SMART:SM00353	EnsemblPlantsGene:SORBI_3004G275500	SUPFAM:SSF47459	UniParc:UPI0001A8622A	RefSeq:XP_002454447.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:61879883..61883669

Molecular Weight (calculated)

37175.8 Da

IEP (calculated)

6.126

GRAVY (calculated)

-0.181

Length

349 amino acids

Sequence
(BLAST)

001: MSALVDALCA APPPSDAAAL VYDTFNAASF LFDTAAFCDG AGIVVAPASA HQQQQQAAVE EAPAGEAQAA TTTSTTTRVR KRRRRARSCK SREETETQRM
101: THIAVERNRR RQMNEYLTAL RSIMPETYVQ RGDQASIVGG AIEFVKELEQ QLQCLEAQKR KLLAAARPDA TPMHASSGSG STRTCCADSA TAATTSNCSS
201: SVTEDAAEHA HAPPPPFAQF FTYPQYVWCH SARNPAAAEG EEDGRRSGVA DVEVTLVETH ASVRVMTTRR PGQLLSLVTG LQALRLAVLH LSVTTLDALV
301: LHSISVKVEE GCGLATADDI AAAVHHVLCI IDAEATEQQL LAAAGPQPQ

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.