Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016095_P001 | Maize | nucleus | 75.13 | 76.08 |
| Os02t0257500-00 | Rice | nucleus | 63.57 | 60.96 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 38.94 | 54.77 |
| GSMUA_Achr10P... | Banana | nucleus | 35.18 | 53.64 |
| EER88428 | Sorghum | nucleus | 50.25 | 52.63 |
| Solyc03g007410.2.1 | Tomato | nucleus | 42.96 | 51.2 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 39.95 | 51.13 |
| KRH64504 | Soybean | nucleus | 42.71 | 49.42 |
| KRH53438 | Soybean | nucleus | 43.22 | 49.28 |
| PGSC0003DMT400023497 | Potato | nucleus | 43.47 | 48.73 |
| KRH18131 | Soybean | nucleus | 40.95 | 48.51 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 40.95 | 48.22 |
| CDY47059 | Canola | nucleus | 41.96 | 47.85 |
| CDY19692 | Canola | nucleus | 41.96 | 47.31 |
| CDY38734 | Canola | nucleus | 41.96 | 47.31 |
| KRH16521 | Soybean | nucleus | 39.2 | 47.13 |
| CDY14397 | Canola | nucleus | 41.96 | 47.04 |
| AT5G53210.1 | Thale cress | nucleus | 42.96 | 46.98 |
| Bra029088.1-P | Field mustard | nucleus | 37.94 | 44.94 |
| Bra022638.1-P | Field mustard | nucleus | 38.44 | 43.71 |
| CDX96201 | Canola | nucleus | 38.44 | 43.47 |
| KXG22733 | Sorghum | nucleus | 25.88 | 43.28 |
| Bra003073.1-P | Field mustard | nucleus | 39.2 | 36.03 |
| KXG27015 | Sorghum | cytosol | 20.35 | 23.62 |
| OQU91887 | Sorghum | nucleus | 19.1 | 23.46 |
| EER95359 | Sorghum | nucleus | 20.35 | 22.69 |
| KXG30709 | Sorghum | nucleus | 19.6 | 22.29 |
| EES07423 | Sorghum | nucleus | 18.59 | 21.2 |
| EER96894 | Sorghum | nucleus | 17.84 | 21.01 |
| OQU93358 | Sorghum | nucleus | 16.58 | 20.43 |
| KXG27016 | Sorghum | cytosol, nucleus, plastid | 16.58 | 19.08 |
| KXG22636 | Sorghum | nucleus | 21.86 | 19.04 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:8059051 | UniProt:C5XZG8 | EnsemblPlants:EES06610 | ProteinID:EES06610 |
| ProteinID:EES06610.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 |
| SMART:SM00353 | EnsemblPlantsGene:SORBI_3004G115000 | SUPFAM:SSF47459 | UniParc:UPI0001A85EAB | RefSeq:XP_002453634.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:11752598..11757119
Molecular Weight (calculated)
41739.6 Da
IEP (calculated)
8.017
GRAVY (calculated)
-0.236
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGLCELLV DDHCELRHRL SGAEDLFSII GTTWKEGTNR AGGDGAGGCS SGAMRAYSQS SPAGAVGARP SVNCRKRTGD EEKGSGGGGA PVQKKHKGSA
101: VTDDAAADEG EAKMSHITVE RNRRKQMNEH LTVLRSLMPC FYVKRGDQAS IIGGVVDYIK ELQQVLRSLE TKKHRKAYAE QVLSPRPAGG SVSAASPRPL
201: AAVVKSTPPL SPRVAVPISP RTPTPGSPYK PAAAASGAAG TAGSCRLPYP PAAAAYMAAA SPAITPTSSS SSYSLDQQQQ QQHYSMQTTT TTYLPTLDSL
301: VTELAAQAAC RPAAAGLNLP DVKVEFAGPN LVLKTVSHRS PGQALKIIAA LESLSLEILH VSVSTVDDTM VHSFTIKIGI ECELSAEELV QEIQQTLL
101: VTDDAAADEG EAKMSHITVE RNRRKQMNEH LTVLRSLMPC FYVKRGDQAS IIGGVVDYIK ELQQVLRSLE TKKHRKAYAE QVLSPRPAGG SVSAASPRPL
201: AAVVKSTPPL SPRVAVPISP RTPTPGSPYK PAAAASGAAG TAGSCRLPYP PAAAAYMAAA SPAITPTSSS SSYSLDQQQQ QQHYSMQTTT TTYLPTLDSL
301: VTELAAQAAC RPAAAGLNLP DVKVEFAGPN LVLKTVSHRS PGQALKIIAA LESLSLEILH VSVSTVDDTM VHSFTIKIGI ECELSAEELV QEIQQTLL
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.