Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14397 | Canola | nucleus | 96.03 | 95.49 |
| CDY38734 | Canola | nucleus | 88.1 | 88.1 |
| CDY47059 | Canola | nucleus | 86.69 | 87.68 |
| AT5G53210.1 | Thale cress | nucleus | 90.37 | 87.64 |
| CDX96201 | Canola | nucleus | 83.0 | 83.24 |
| Bra003073.1-P | Field mustard | nucleus | 91.78 | 74.83 |
| KRH64504 | Soybean | nucleus | 60.06 | 61.63 |
| KRH18131 | Soybean | nucleus | 57.79 | 60.71 |
| KRH53438 | Soybean | nucleus | 59.77 | 60.46 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 57.22 | 59.76 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 47.03 | 58.66 |
| KRH16521 | Soybean | nucleus | 54.96 | 58.61 |
| GSMUA_Achr10P... | Banana | nucleus | 41.93 | 56.7 |
| Solyc03g007410.2.1 | Tomato | nucleus | 52.41 | 55.39 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 48.44 | 54.98 |
| PGSC0003DMT400023497 | Potato | nucleus | 53.82 | 53.52 |
| CDY24717 | Canola | nucleus | 28.05 | 49.25 |
| CDY05233 | Canola | nucleus | 28.05 | 48.53 |
| CDY18843 | Canola | nucleus | 27.48 | 48.26 |
| CDY08066 | Canola | nucleus | 28.05 | 47.83 |
| CDY58338 | Canola | nucleus | 28.05 | 47.83 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 47.59 | 46.15 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 47.31 | 45.88 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 47.31 | 45.75 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 47.03 | 45.6 |
| EER88428 | Sorghum | nucleus | 47.31 | 43.95 |
| Zm00001d046096_P001 | Maize | nucleus | 41.64 | 42.49 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 45.04 | 42.4 |
| EES06610 | Sorghum | nucleus | 47.31 | 41.96 |
| Zm00001d016095_P001 | Maize | nucleus | 45.89 | 41.22 |
| Os02t0257500-00 | Rice | nucleus | 46.18 | 39.28 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 43.06 | 38.48 |
| CDY37634 | Canola | nucleus | 21.81 | 33.77 |
| CDX85167 | Canola | nucleus | 31.73 | 28.79 |
| CDX77460 | Canola | nucleus | 28.9 | 28.65 |
| CDY41479 | Canola | nucleus | 22.95 | 28.32 |
| CDX92996 | Canola | nucleus | 32.29 | 28.15 |
| CDX94841 | Canola | nucleus | 32.01 | 27.7 |
| CDY51710 | Canola | nucleus | 24.08 | 27.33 |
| CDX91680 | Canola | nucleus | 22.1 | 27.27 |
| CDY03201 | Canola | cytosol | 13.88 | 27.07 |
| CDY37820 | Canola | nucleus | 16.43 | 26.61 |
| CDY07143 | Canola | nucleus | 23.23 | 26.45 |
| CDY21365 | Canola | nucleus | 22.38 | 26.25 |
| CDY04811 | Canola | nucleus | 22.38 | 26.25 |
| CDY46652 | Canola | nucleus | 20.96 | 26.24 |
| CDY12528 | Canola | nucleus | 20.96 | 26.24 |
| CDY11386 | Canola | nucleus | 20.68 | 26.16 |
| CDY18083 | Canola | nucleus | 28.05 | 25.78 |
| CDY64587 | Canola | nucleus | 26.63 | 25.34 |
| CDY35175 | Canola | nucleus | 20.68 | 24.83 |
| CDX77682 | Canola | nucleus | 22.66 | 24.69 |
| CDY63053 | Canola | nucleus | 22.66 | 24.69 |
| CDX72877 | Canola | nucleus | 22.66 | 24.39 |
| CDY03650 | Canola | nucleus | 22.38 | 24.23 |
| CDX82171 | Canola | nucleus | 22.38 | 24.23 |
| CDX68274 | Canola | nucleus | 22.1 | 24.07 |
| CDY50447 | Canola | nucleus | 22.1 | 24.07 |
| CDX96382 | Canola | nucleus | 22.1 | 24.0 |
| CDY33966 | Canola | nucleus | 20.4 | 23.84 |
| CDX80049 | Canola | nucleus | 20.96 | 23.64 |
| CDY27521 | Canola | nucleus | 20.68 | 23.55 |
| CDY41561 | Canola | nucleus | 20.68 | 23.4 |
| CDY65719 | Canola | nucleus | 19.83 | 23.26 |
| CDX76598 | Canola | nucleus | 20.68 | 23.17 |
| CDY41734 | Canola | nucleus | 19.55 | 22.92 |
| CDY68483 | Canola | nucleus | 20.68 | 22.81 |
| CDY48013 | Canola | nucleus | 20.4 | 22.64 |
| CDY55926 | Canola | nucleus | 20.4 | 22.29 |
| CDY55929 | Canola | nucleus | 18.13 | 19.16 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078G3V8 | UniProt:A0A078G3V8 | EnsemblPlants:CDY19692 | ProteinID:CDY19692 |
| ProteinID:CDY19692.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00009414001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC18EF | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g29480DBnaC09g29480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3V8]
Coordinates
chrLK032099:-:555893..559183
Molecular Weight (calculated)
38935.0 Da
IEP (calculated)
4.783
GRAVY (calculated)
-0.531
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MQETILDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKNQN YEASSAKKKR KRLETGKEEE DDDDGEGEEE EEEDNKQDGQ
101: QKMSHVNVER NRRKQMNEHL TVLRSLMPCF YVKRGDQASI IGGVVEYISE LQQVLQSLEA KKERKTYAEV LSPRLVPSPR PSPPVLSPRK PPISPRISHQ
201: HLLLHPISPR TPLPTSPYGG HPPQLPLIPQ PPRSYSLGDP PPYSPASSSS SPSVSSNHES SLINELVANS KSALADVEVK FSGANVLLKT VSHKIPGQVM
301: KIIAALEDLS LEILQVNINT VEETMLYSFT IKIGIECQLS AEELAQQIQQ TFC
101: QKMSHVNVER NRRKQMNEHL TVLRSLMPCF YVKRGDQASI IGGVVEYISE LQQVLQSLEA KKERKTYAEV LSPRLVPSPR PSPPVLSPRK PPISPRISHQ
201: HLLLHPISPR TPLPTSPYGG HPPQLPLIPQ PPRSYSLGDP PPYSPASSSS SPSVSSNHES SLINELVANS KSALADVEVK FSGANVLLKT VSHKIPGQVM
301: KIIAALEDLS LEILQVNINT VEETMLYSFT IKIGIECQLS AEELAQQIQQ TFC
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.