Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64504 | Soybean | nucleus | 70.71 | 69.48 |
| KRH18131 | Soybean | nucleus | 68.64 | 69.05 |
| KRH53438 | Soybean | nucleus | 71.01 | 68.77 |
| KRH16521 | Soybean | nucleus | 64.5 | 65.86 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 57.69 | 62.7 |
| Solyc03g007410.2.1 | Tomato | nucleus | 60.95 | 61.68 |
| PGSC0003DMT400023497 | Potato | nucleus | 64.2 | 61.13 |
| GSMUA_Achr10P... | Banana | nucleus | 46.45 | 60.15 |
| CDY47059 | Canola | nucleus | 61.24 | 59.31 |
| VIT_05s0020g02700.t01 | Wine grape | nucleus | 33.14 | 58.95 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 49.11 | 58.66 |
| CDY38734 | Canola | nucleus | 60.35 | 57.79 |
| CDY14397 | Canola | nucleus | 60.65 | 57.75 |
| CDY19692 | Canola | nucleus | 59.76 | 57.22 |
| AT5G53210.1 | Thale cress | nucleus | 61.54 | 57.14 |
| Bra029088.1-P | Field mustard | nucleus | 55.92 | 56.25 |
| Bra022638.1-P | Field mustard | nucleus | 56.21 | 54.29 |
| CDX96201 | Canola | nucleus | 56.51 | 54.26 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 51.48 | 47.67 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 51.18 | 47.53 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 50.89 | 47.25 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 50.59 | 46.98 |
| Bra003073.1-P | Field mustard | nucleus | 57.1 | 44.57 |
| Zm00001d046096_P001 | Maize | nucleus | 43.79 | 42.77 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 46.45 | 41.87 |
| EER88428 | Sorghum | nucleus | 47.04 | 41.84 |
| Zm00001d016095_P001 | Maize | nucleus | 48.22 | 41.48 |
| EES06610 | Sorghum | nucleus | 48.22 | 40.95 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 46.75 | 40.0 |
| Os02t0257500-00 | Rice | nucleus | 47.93 | 39.04 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 27.51 | 30.0 |
| VIT_07s0191g00240.t01 | Wine grape | nucleus | 27.81 | 29.19 |
| VIT_14s0128g00110.t01 | Wine grape | nucleus | 27.51 | 28.79 |
| VIT_05s0029g00050.t01 | Wine grape | nucleus | 32.54 | 27.71 |
| VIT_02s0012g01450.t01 | Wine grape | nucleus | 25.74 | 27.62 |
| VIT_15s0048g02510.t01 | Wine grape | nucleus | 27.81 | 26.04 |
Protein Annotations
| EntrezGene:100262241 | wikigene:100262241 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:AKA36602.1 | ProteinID:CBI22548 |
| ProteinID:CBI22548.3 | UniProt:E0CUJ9 | EMBL:FN595243 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EMBL:KM102742 | EntrezGene:LOC100262241 |
| wikigene:LOC100262241 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00015CCC44 | ArrayExpress:VIT_16s0050g02500 | EnsemblPlantsGene:VIT_16s0050g02500 | EnsemblPlants:VIT_16s0050g02500.t01 | RefSeq:XP_002267745 |
| RefSeq:XP_002267745.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
Speechless [Source:UniProtKB/TrEMBL;Acc:E0CUJ9]
Coordinates
chr16:+:19472593..19474275
Molecular Weight (calculated)
36988.8 Da
IEP (calculated)
5.165
GRAVY (calculated)
-0.423
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSLSDFFE EPEFGGETSL TGVASPDDLD LFSIFESLEG VSEVPPLEET VLGSKEGEET ARLVSQKSTS SSALQESETE LEASPKRKRP KLAAPTSSEE
101: GNPDGQQRVS HITVERNRRK QMNEHLSVLR SLMPCFYVKR GDQASIIGGV VDYIKELQQV LRSLEAKKQR KVYSEVLSPR VVSSPRPPPI SPRKPPLSPR
201: ISLPISPRTP QPTSPYKPVR LQQGYLSPTI APSLEPSPSS STSSNDNANE LIVNSKSAIA DVEVKYSCPN VVLKTKSSRI PGQAVKIISA LEDLSLEILH
301: VSISSIDETM LNSFTIKFGI ECQLSAEELA HQVQQTFC
101: GNPDGQQRVS HITVERNRRK QMNEHLSVLR SLMPCFYVKR GDQASIIGGV VDYIKELQQV LRSLEAKKQR KVYSEVLSPR VVSSPRPPPI SPRKPPLSPR
201: ISLPISPRTP QPTSPYKPVR LQQGYLSPTI APSLEPSPSS STSSNDNANE LIVNSKSAIA DVEVKYSCPN VVLKTKSSRI PGQAVKIISA LEDLSLEILH
301: VSISSIDETM LNSFTIKFGI ECQLSAEELA HQVQQTFC
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.