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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY14397 Canola nucleus 77.14 94.08
CDY19692 Canola nucleus 74.83 91.78
Bra022638.1-P Field mustard nucleus 69.52 86.0
Bra029088.1-P Field mustard nucleus 66.51 85.71
AT5G53210.1 Thale cress nucleus 71.13 84.62
KRH64504 Soybean nucleus 45.96 57.85
KRH18131 Soybean nucleus 44.34 57.14
VIT_16s0050g02500.t01 Wine grape nucleus 44.57 57.1
KRH53438 Soybean nucleus 45.96 57.02
GSMUA_Achr10P... Banana nucleus 33.95 56.32
KRH16521 Soybean nucleus 42.03 54.98
GSMUA_Achr5P06780_001 Banana cytosol 35.1 53.71
Solyc03g007410.2.1 Tomato nucleus 39.72 51.5
GSMUA_Achr8P19870_001 Banana cytosol, golgi, nucleus 36.72 51.13
PGSC0003DMT400023497 Potato nucleus 41.11 50.14
Bra020775.1-P Field mustard nucleus 21.48 46.27
Bra001183.1-P Field mustard nucleus 21.94 45.89
Bra040234.1-P Field mustard nucleus 21.02 45.27
TraesCS7B01G232000.1 Wheat cytosol 36.26 43.13
TraesCS7A01G350900.1 Wheat nucleus 36.03 42.86
Zm00001d046096_P001 Maize nucleus 34.18 42.77
HORVU7Hr1G079250.1 Barley cytosol 36.03 42.74
TraesCS7D01G327900.1 Wheat nucleus 35.8 42.58
EER88428 Sorghum nucleus 35.8 40.79
Zm00001d053391_P001 Maize cytosol, nucleus, plastid 34.18 39.47
EES06610 Sorghum nucleus 36.03 39.2
Os06t0526100-01 Rice cytosol, endoplasmic reticulum, nucleus 35.33 38.73
Zm00001d016095_P001 Maize nucleus 34.87 38.42
Os02t0257500-00 Rice nucleus 34.41 35.9
Bra040856.1-P Field mustard nucleus 16.63 33.18
Bra025007.1-P Field mustard nucleus 17.55 27.74
Bra028351.1-P Field mustard nucleus 22.4 26.94
Bra028357.1-P Field mustard nucleus 24.48 26.5
Bra001929.1-P Field mustard nucleus 24.71 26.42
Bra016377.1-P Field mustard nucleus 18.24 26.16
Bra031865.1-P Field mustard nucleus 13.16 26.15
Bra017533.1-P Field mustard nucleus 17.09 25.61
Bra004505.1-P Field mustard nucleus 15.7 25.09
Bra037414.1-P Field mustard nucleus 18.01 25.08
Bra012329.1-P Field mustard nucleus 17.32 24.75
Bra007644.1-P Field mustard nucleus 15.7 24.37
Bra008017.1-P Field mustard nucleus 17.78 23.62
Bra003886.1-P Field mustard nucleus 17.32 23.15
Bra016080.1-P Field mustard nucleus 17.32 23.08
Bra027958.1-P Field mustard nucleus 15.24 22.6
Bra040483.1-P Field mustard nucleus 15.47 21.07
Protein Annotations
EnsemblPlants:Bra003073.1EnsemblPlants:Bra003073.1-PEnsemblPlantsGene:Bra003073Gene3D:4.10.280.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:bHLH_dom
ncoils:CoilPANTHER:PTHR11514PANTHER:PTHR11514:SF58PFAM:PF00010PFscan:PS50888SEG:seg
SMART:SM00353SUPFAM:SSF47459UniParc:UPI0002543AECUniProt:M4CFU1MapMan:15.5.32:
Description
AT5G53210 (E=1e-118) SPCH | SPCH (SPEECHLESS); DNA binding / transcription factor
Coordinates
chrA10:-:5427208..5430080
Molecular Weight (calculated)
47699.7 Da
IEP (calculated)
5.349
GRAVY (calculated)
-0.531
Length
433 amino acids
Sequence
(BLAST)
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISST AASTPKDGTT SSKELVKNQN HETSSPKKKR KRLETGKEEE EDDDDGEGEE EEEEDEDNKQ
101: DGQQKMSHVN VERNRRKQMN EHLTVLRSLM PCFYVKRGDQ ASIIGGVVEY ISELQQVLQS LEAKKQRKTY AEVLSPRLVP SPRPSPNVLS PRKPPLSPRI
201: SHHHLLLPPI SPRTPLPTSP YGAHPPQLPL IPQPPRSYCL GDPPPYSPAS SSSSPSVSSN HESSLINELV ANSKSALADV EVKFSGANVL LKTVSHKIPG
301: QVMKIIAALQ DLSLEILQVN INTVEETMLY SFTIKPSLLH GSLLLGENLQ CLLPGNRTAK CDPSLTLPPL LGSWAKIVSD VLILPQEKPN KGIPPPALKE
401: NGELRFPWAA KMNPQSPPCH FPDVPRGVWY TND
Best Arabidopsis Sequence Match ( AT5G53210.1 )
(BLAST)
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.