Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY14397 | Canola | nucleus | 77.14 | 94.08 |
CDY19692 | Canola | nucleus | 74.83 | 91.78 |
Bra022638.1-P | Field mustard | nucleus | 69.52 | 86.0 |
Bra029088.1-P | Field mustard | nucleus | 66.51 | 85.71 |
AT5G53210.1 | Thale cress | nucleus | 71.13 | 84.62 |
KRH64504 | Soybean | nucleus | 45.96 | 57.85 |
KRH18131 | Soybean | nucleus | 44.34 | 57.14 |
VIT_16s0050g02500.t01 | Wine grape | nucleus | 44.57 | 57.1 |
KRH53438 | Soybean | nucleus | 45.96 | 57.02 |
GSMUA_Achr10P... | Banana | nucleus | 33.95 | 56.32 |
KRH16521 | Soybean | nucleus | 42.03 | 54.98 |
GSMUA_Achr5P06780_001 | Banana | cytosol | 35.1 | 53.71 |
Solyc03g007410.2.1 | Tomato | nucleus | 39.72 | 51.5 |
GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 36.72 | 51.13 |
PGSC0003DMT400023497 | Potato | nucleus | 41.11 | 50.14 |
Bra020775.1-P | Field mustard | nucleus | 21.48 | 46.27 |
Bra001183.1-P | Field mustard | nucleus | 21.94 | 45.89 |
Bra040234.1-P | Field mustard | nucleus | 21.02 | 45.27 |
TraesCS7B01G232000.1 | Wheat | cytosol | 36.26 | 43.13 |
TraesCS7A01G350900.1 | Wheat | nucleus | 36.03 | 42.86 |
Zm00001d046096_P001 | Maize | nucleus | 34.18 | 42.77 |
HORVU7Hr1G079250.1 | Barley | cytosol | 36.03 | 42.74 |
TraesCS7D01G327900.1 | Wheat | nucleus | 35.8 | 42.58 |
EER88428 | Sorghum | nucleus | 35.8 | 40.79 |
Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 34.18 | 39.47 |
EES06610 | Sorghum | nucleus | 36.03 | 39.2 |
Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 35.33 | 38.73 |
Zm00001d016095_P001 | Maize | nucleus | 34.87 | 38.42 |
Os02t0257500-00 | Rice | nucleus | 34.41 | 35.9 |
Bra040856.1-P | Field mustard | nucleus | 16.63 | 33.18 |
Bra025007.1-P | Field mustard | nucleus | 17.55 | 27.74 |
Bra028351.1-P | Field mustard | nucleus | 22.4 | 26.94 |
Bra028357.1-P | Field mustard | nucleus | 24.48 | 26.5 |
Bra001929.1-P | Field mustard | nucleus | 24.71 | 26.42 |
Bra016377.1-P | Field mustard | nucleus | 18.24 | 26.16 |
Bra031865.1-P | Field mustard | nucleus | 13.16 | 26.15 |
Bra017533.1-P | Field mustard | nucleus | 17.09 | 25.61 |
Bra004505.1-P | Field mustard | nucleus | 15.7 | 25.09 |
Bra037414.1-P | Field mustard | nucleus | 18.01 | 25.08 |
Bra012329.1-P | Field mustard | nucleus | 17.32 | 24.75 |
Bra007644.1-P | Field mustard | nucleus | 15.7 | 24.37 |
Bra008017.1-P | Field mustard | nucleus | 17.78 | 23.62 |
Bra003886.1-P | Field mustard | nucleus | 17.32 | 23.15 |
Bra016080.1-P | Field mustard | nucleus | 17.32 | 23.08 |
Bra027958.1-P | Field mustard | nucleus | 15.24 | 22.6 |
Bra040483.1-P | Field mustard | nucleus | 15.47 | 21.07 |
Protein Annotations
EnsemblPlants:Bra003073.1 | EnsemblPlants:Bra003073.1-P | EnsemblPlantsGene:Bra003073 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
ncoils:Coil | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002543AEC | UniProt:M4CFU1 | MapMan:15.5.32 | : |
Description
AT5G53210 (E=1e-118) SPCH | SPCH (SPEECHLESS); DNA binding / transcription factor
Coordinates
chrA10:-:5427208..5430080
Molecular Weight (calculated)
47699.7 Da
IEP (calculated)
5.349
GRAVY (calculated)
-0.531
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISST AASTPKDGTT SSKELVKNQN HETSSPKKKR KRLETGKEEE EDDDDGEGEE EEEEDEDNKQ
101: DGQQKMSHVN VERNRRKQMN EHLTVLRSLM PCFYVKRGDQ ASIIGGVVEY ISELQQVLQS LEAKKQRKTY AEVLSPRLVP SPRPSPNVLS PRKPPLSPRI
201: SHHHLLLPPI SPRTPLPTSP YGAHPPQLPL IPQPPRSYCL GDPPPYSPAS SSSSPSVSSN HESSLINELV ANSKSALADV EVKFSGANVL LKTVSHKIPG
301: QVMKIIAALQ DLSLEILQVN INTVEETMLY SFTIKPSLLH GSLLLGENLQ CLLPGNRTAK CDPSLTLPPL LGSWAKIVSD VLILPQEKPN KGIPPPALKE
401: NGELRFPWAA KMNPQSPPCH FPDVPRGVWY TND
101: DGQQKMSHVN VERNRRKQMN EHLTVLRSLM PCFYVKRGDQ ASIIGGVVEY ISELQQVLQS LEAKKQRKTY AEVLSPRLVP SPRPSPNVLS PRKPPLSPRI
201: SHHHLLLPPI SPRTPLPTSP YGAHPPQLPL IPQPPRSYCL GDPPPYSPAS SSSSPSVSSN HESSLINELV ANSKSALADV EVKFSGANVL LKTVSHKIPG
301: QVMKIIAALQ DLSLEILQVN INTVEETMLY SFTIKPSLLH GSLLLGENLQ CLLPGNRTAK CDPSLTLPPL LGSWAKIVSD VLILPQEKPN KGIPPPALKE
401: NGELRFPWAA KMNPQSPPCH FPDVPRGVWY TND
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.