Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400023497 | Potato | nucleus | 92.52 | 87.04 |
| KRH64504 | Soybean | nucleus | 63.47 | 61.63 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 61.68 | 60.95 |
| KRH53438 | Soybean | nucleus | 63.17 | 60.46 |
| KRH18131 | Soybean | nucleus | 60.48 | 60.12 |
| KRH16521 | Soybean | nucleus | 58.08 | 58.61 |
| GSMUA_Achr10P... | Banana | nucleus | 43.71 | 55.94 |
| Solyc01g080050.2.1 | Tomato | nucleus | 32.63 | 55.9 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 47.31 | 55.83 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 51.5 | 55.31 |
| CDY47059 | Canola | nucleus | 57.78 | 55.3 |
| CDY38734 | Canola | nucleus | 57.48 | 54.39 |
| AT5G53210.1 | Thale cress | nucleus | 58.38 | 53.57 |
| CDY14397 | Canola | nucleus | 55.99 | 52.68 |
| CDY19692 | Canola | nucleus | 55.39 | 52.41 |
| Bra029088.1-P | Field mustard | nucleus | 51.8 | 51.49 |
| CDX96201 | Canola | nucleus | 51.2 | 48.58 |
| Bra022638.1-P | Field mustard | nucleus | 50.9 | 48.57 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 51.5 | 47.25 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 51.5 | 47.12 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 51.2 | 46.98 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 51.2 | 46.98 |
| EER88428 | Sorghum | nucleus | 51.2 | 45.0 |
| Zm00001d046096_P001 | Maize | nucleus | 45.81 | 44.22 |
| EES06610 | Sorghum | nucleus | 51.2 | 42.96 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 47.9 | 42.67 |
| Zm00001d016095_P001 | Maize | nucleus | 49.4 | 41.98 |
| Bra003073.1-P | Field mustard | nucleus | 51.5 | 39.72 |
| Os02t0257500-00 | Rice | nucleus | 48.8 | 39.28 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 45.81 | 38.73 |
| Solyc09g091760.1.1 | Tomato | nucleus | 26.65 | 36.03 |
| Solyc12g087850.1.1 | Tomato | nucleus | 15.57 | 32.1 |
| Solyc05g053660.1.1 | Tomato | nucleus | 32.93 | 28.72 |
| Solyc04g074810.2.1 | Tomato | extracellular | 25.75 | 24.23 |
| Solyc11g010340.1.1 | Tomato | nucleus | 21.56 | 24.16 |
| Solyc08g076820.2.1 | Tomato | nucleus | 22.46 | 22.87 |
| Solyc01g098720.2.1 | Tomato | nucleus | 22.16 | 22.56 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0010374 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:K4BEG4 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | SMART:SM00353 |
| SUPFAM:SSF47459 | EnsemblPlantsGene:Solyc03g007410.2 | EnsemblPlants:Solyc03g007410.2.1 | UniParc:UPI0002768145 | InterPro:bHLH_dom | SEG:seg |
Description
Transcription factor SPEECHLESS [Source:Projected from Arabidopsis thaliana (AT5G53210) UniProtKB/Swiss-Prot;Acc:Q700C7]
Coordinates
chr3:+:1952298..1954788
Molecular Weight (calculated)
36038.9 Da
IEP (calculated)
6.056
GRAVY (calculated)
-0.329
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDQNLSDL FDDSECDIFG ILEALEGGGG GGGNSGITSK FNDNINNQTA TIATTITTTT SDEITGLVSE EGKKRKLISQ KSTGSCATLQ EEETIENKIS
101: HITVERNRRK QMNEHLSVLR TLMPCFYAKR GDQASIIGGV VDYINELQQV LQSLEAKKQR KVYSEVLSPR VLPPQLVPIS PRLLTPSPLS PRKPPLSPRM
201: NLPISPRTPQ PTSPYKPNAN ANKPPEPSPT TSSNSSIDSH VNNELAANSK SAIADVEVKF SGAGANVILK TVSPRIPGQA VKIIAALEQL ALEILHVSIS
301: TIDGTMLNSF TIKIGIECQL SAEELAHQIQ QTFC
101: HITVERNRRK QMNEHLSVLR TLMPCFYAKR GDQASIIGGV VDYINELQQV LQSLEAKKQR KVYSEVLSPR VLPPQLVPIS PRLLTPSPLS PRKPPLSPRM
201: NLPISPRTPQ PTSPYKPNAN ANKPPEPSPT TSSNSSIDSH VNNELAANSK SAIADVEVKF SGAGANVILK TVSPRIPGQA VKIIAALEQL ALEILHVSIS
301: TIDGTMLNSF TIKIGIECQL SAEELAHQIQ QTFC
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.