Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073574 | Potato | nucleus | 94.51 | 91.99 |
| VIT_14s0128g00110.t01 | Wine grape | nucleus | 46.34 | 47.06 |
| KRG96858 | Soybean | nucleus | 46.95 | 46.39 |
| Solyc12g087850.1.1 | Tomato | nucleus | 22.26 | 45.06 |
| Solyc11g010340.1.1 | Tomato | nucleus | 40.55 | 44.63 |
| KRG92821 | Soybean | nucleus | 44.21 | 44.21 |
| KRH68589 | Soybean | nucleus | 46.04 | 44.02 |
| KRH33976 | Soybean | nucleus | 42.99 | 42.47 |
| CDY65719 | Canola | nucleus | 37.2 | 40.53 |
| CDY41734 | Canola | nucleus | 36.89 | 40.2 |
| Bra027958.1-P | Field mustard | nucleus | 34.76 | 39.04 |
| Solyc04g074810.2.1 | Tomato | extracellular | 41.46 | 38.31 |
| Solyc08g076820.2.1 | Tomato | nucleus | 37.5 | 37.5 |
| Solyc09g091760.1.1 | Tomato | nucleus | 26.83 | 35.63 |
| Solyc01g080050.2.1 | Tomato | nucleus | 20.43 | 34.36 |
| Solyc05g053660.1.1 | Tomato | nucleus | 29.27 | 25.07 |
| Solyc03g007410.2.1 | Tomato | nucleus | 22.56 | 22.16 |
Protein Annotations
| EnsemblPlants:Solyc01g098720.2.1 | EnsemblPlantsGene:Solyc01g098720.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00027687D7 | UniProt:K4B0Q9 | MapMan:15.5.32 | : | : |
Description
No Description!
Coordinates
chr1:+:89149935..89151701
Molecular Weight (calculated)
37497.8 Da
IEP (calculated)
4.999
GRAVY (calculated)
-0.625
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAITQQQ QYLYALLGTT NWSIDSGSDY YNNNEFVPNH QNVTAPQEYE DYSNWNLPAP LLVDSQNEFH QWGQNCSSVL DHNFTIVDQQ EQLESPIEMS
101: SSTTRPRRRR TRTKKNDEEI ENQRITHIAV ERNRRKQMND YLSVLRTLMP ESYVQRGDQA SIVSGAINYV KELEQQLQFL SGKKHLTSQN QEANGETSPF
201: SEFFSIPQYS TTITAAAAAT TTSENVCCEN EYYRNQQLPA TADIEVTMVE NHANLKIRSK KRPRLLPTII SGLESLRLTV LHLNVSKVDQ FVLCSLSLKV
301: EEDCKMNSVE DIAAVVNQIL SRIHEEAN
101: SSTTRPRRRR TRTKKNDEEI ENQRITHIAV ERNRRKQMND YLSVLRTLMP ESYVQRGDQA SIVSGAINYV KELEQQLQFL SGKKHLTSQN QEANGETSPF
201: SEFFSIPQYS TTITAAAAAT TTSENVCCEN EYYRNQQLPA TADIEVTMVE NHANLKIRSK KRPRLLPTII SGLESLRLTV LHLNVSKVDQ FVLCSLSLKV
301: EEDCKMNSVE DIAAVVNQIL SRIHEEAN
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.