CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68589	Soybean	nucleus	92.47	89.5
KRH33976	Soybean	nucleus	71.39	71.39
KRG92821	Soybean	nucleus	69.88	70.73
VIT_14s0128g00110.t01	Wine grape	nucleus	60.54	62.23
KRH16792	Soybean	nucleus	50.0	51.23
KRH62289	Soybean	nucleus	50.0	51.23
KRH53000	Soybean	nucleus	50.3	50.0
KRH72411	Soybean	nucleus	50.0	47.98
Solyc01g098720.2.1	Tomato	nucleus	46.39	46.95
PGSC0003DMT400073574	Potato	nucleus	47.59	46.88
KRH75598	Soybean	nucleus	39.46	43.23
CDY65719	Canola	nucleus	38.86	42.86
KRH45428	Soybean	nucleus	38.86	42.57
CDY41734	Canola	nucleus	38.55	42.52
KRH11385	Soybean	cytosol	23.8	41.36
KRH20902	Soybean	cytosol	23.49	40.84
Bra027958.1-P	Field mustard	nucleus	35.54	40.41
KRH47774	Soybean	nucleus	38.25	33.07
KRH06347	Soybean	nucleus	37.35	31.16
KRH16521	Soybean	nucleus	28.31	28.4
KRH18131	Soybean	nucleus	28.01	27.68
KRH75571	Soybean	nucleus	34.94	27.04
KRH64504	Soybean	nucleus	26.51	25.58
KRH53438	Soybean	nucleus	26.81	25.5
KRH71094	Soybean	nucleus	34.04	25.34

Protein Annotations

EntrezGene:100782243	MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A0R0F2U2	EMBL:ACUP02012167	ncoils:Coil
EnsemblPlantsGene:GLYMA_19G236900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRG96858	ProteinID:KRG96858	ProteinID:KRG96858.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF26	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0006ED95A1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:48599747..48602259

Molecular Weight (calculated)

37265.2 Da

IEP (calculated)

6.184

GRAVY (calculated)

-0.611

Length

332 amino acids

Sequence
(BLAST)

001: MTGSHIKVLC MCLPEGERGM ALEAVVYPQP QDPFGYGIKD PSYNYNNLLE GGGGNWGFEK EEQGFVTFLE NQTENYPYGE WNCSPSPPSM LPHLNASNPQ
101: SSETSNIHNN LDSSISTPAR PKRRRTKSRK NKEEIENQRM THIAVERNRR KQMNEYLSVL RSLMPESYVQ RGDQASIIGG AINFVKELEQ RLQFLGGQKE
201: KEEKSDVPFS EFFSFPQYST SAGGGCDNST AMSEQKCEAQ SGIADIEVTM VESHANLKIR SKKRPKQLLK IVSSLHGMRL TILHLNVTTT GEIVLYSLSV
301: KVEEDCKLGS VDEIAAAVYQ MLDRIQQESI LN

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.