CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33976	Soybean	nucleus	91.16	90.06
KRG96858	Soybean	nucleus	70.73	69.88
KRH68589	Soybean	nucleus	69.51	66.47
VIT_14s0128g00110.t01	Wine grape	nucleus	58.54	59.44
KRH62289	Soybean	nucleus	50.0	50.62
KRH53000	Soybean	nucleus	50.3	49.4
KRH16792	Soybean	nucleus	48.78	49.38
KRH72411	Soybean	nucleus	49.09	46.53
Solyc01g098720.2.1	Tomato	nucleus	44.21	44.21
PGSC0003DMT400073574	Potato	nucleus	45.12	43.92
CDY65719	Canola	nucleus	38.11	41.53
CDY41734	Canola	nucleus	37.8	41.2
KRH45428	Soybean	nucleus	37.5	40.59
KRH75598	Soybean	nucleus	37.5	40.59
KRH20902	Soybean	cytosol	22.56	38.74
KRH11385	Soybean	cytosol	22.56	38.74
Bra027958.1-P	Field mustard	nucleus	34.15	38.36
KRH47774	Soybean	nucleus	39.33	33.59
KRH06347	Soybean	nucleus	39.02	32.16
KRH16521	Soybean	nucleus	25.91	25.68
KRH18131	Soybean	nucleus	25.91	25.3
KRH75571	Soybean	nucleus	32.62	24.94
KRH64504	Soybean	nucleus	25.61	24.42
KRH53438	Soybean	nucleus	25.91	24.36
KRH71094	Soybean	nucleus	32.01	23.54

Protein Annotations

EntrezGene:100779213	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02012768	EnsemblPlantsGene:GLYMA_20G231800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1NIX1	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlants:KRG92821	ProteinID:KRG92821	ProteinID:KRG92821.1	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR11969	PANTHER:PTHR11969:SF26	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001E24225	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:46527972..46529785

Molecular Weight (calculated)

36297.6 Da

IEP (calculated)

5.678

GRAVY (calculated)

-0.573

Length

328 amino acids

Sequence
(BLAST)

001: MALEAVVFPQ SQDPFGGSGY GSVNNKDFYN CTLLAATSPN SWGDYEQHIN INKEEEQGGA SISTFQPESN YPYGNWTSSS SSMLPHFNNE LQETTTTDPS
101: NTLDSLNTRP KRRRAKSRKN KEEIENQRMT HIAVERNRRK QMNEYLSVLR SLMPDSYIQR GDQASIIGGA INFVKELEQR MHFLGAQKEG EGKSEAGGAT
201: NMPFSEFFTF PQYSTSGGGG CSDNSAAVGE DVGEVKCGIA DIEVTMVESH ANLKIRSKKR PKQLLKLVSG LHTMRLTILH LNVTTTGEVV LYSLSVKVED
301: DCKLGSVDDI AAAVYQMLDK IQQEAMLN

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.