Factsheet for Bra027958.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41734	Canola	nucleus	92.81	90.03
CDY65719	Canola	nucleus	92.47	89.7
Bra040856.1-P	Field mustard	nucleus	33.56	45.16
VIT_14s0128g00110.t01	Wine grape	nucleus	40.75	36.84
Bra003886.1-P	Field mustard	nucleus	40.07	36.11
KRG96858	Soybean	nucleus	40.41	35.54
Solyc01g098720.2.1	Tomato	nucleus	39.04	34.76
Bra025007.1-P	Field mustard	nucleus	32.53	34.67
Bra012329.1-P	Field mustard	nucleus	35.96	34.65
Bra016080.1-P	Field mustard	nucleus	38.36	34.46
Bra008017.1-P	Field mustard	nucleus	38.36	34.36
KRG92821	Soybean	nucleus	38.36	34.15
Bra016377.1-P	Field mustard	nucleus	35.27	34.11
KRH68589	Soybean	nucleus	39.73	33.82
PGSC0003DMT400073574	Potato	nucleus	38.7	33.53
KRH33976	Soybean	nucleus	38.01	33.43
Bra017533.1-P	Field mustard	nucleus	31.51	31.83
Bra040234.1-P	Field mustard	nucleus	19.86	28.86
Bra020775.1-P	Field mustard	nucleus	19.86	28.86
Bra004505.1-P	Field mustard	nucleus	25.68	27.68
Bra037414.1-P	Field mustard	nucleus	29.45	27.65
Bra001183.1-P	Field mustard	nucleus	19.18	27.05
Bra007644.1-P	Field mustard	nucleus	25.0	26.16
Bra031865.1-P	Field mustard	nucleus	19.52	26.15
Bra040483.1-P	Field mustard	nucleus	26.03	23.9
Bra028357.1-P	Field mustard	nucleus	29.79	21.75
Bra001929.1-P	Field mustard	nucleus	29.79	21.48
Bra028351.1-P	Field mustard	nucleus	26.03	21.11
Bra029088.1-P	Field mustard	nucleus	22.26	19.35
Bra022638.1-P	Field mustard	nucleus	21.23	17.71
Bra003073.1-P	Field mustard	nucleus	22.6	15.24

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra027958	EnsemblPlants:Bra027958.1	EnsemblPlants:Bra027958.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4EGP4	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR11969	PANTHER:PTHR11969:SF26	SMART:SM00353	SUPFAM:SSF47459	TMHMM:TMhelix	UniParc:UPI0002542229
InterPro:bHLH_dom	:	:	:	:	:

Description

AT1G72210 (E=3e-047) | basic helix-loop-helix (bHLH) family protein (bHLH096)

Coordinates

chrA09:-:10115899..10117740

Molecular Weight (calculated)

32998.2 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.320

Length

292 amino acids

Sequence
(BLAST)

001: MALEGAISQC SYNGKEAYSN IYTDNEPPFS DLQAALCFLD NQTDNYDSTF LQEGYYGNTT TFLHQPPNEE KPAANCDISF HGDMGKNQVT RRTRAKKNKE
101: EISNQRMTHI AVERNRRRQM NEYLSVLRSL MPESYVQRCD QASTVGGAIN FIRELEHRLH LQNLCCETNE TSLSGSCMSS ATPFSDTFKL PQFSMGSSSV
201: SDNMVLEVNA LADIEVSLVE SHATLKIRSR RRPKVLLNMV SGLQNLGFII LHLNVSTVSD FVLYCFSTKV CFCLIINHLF VNVTVNKHSK IY

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.