Factsheet for Bra040856.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21365	Canola	nucleus	99.54	71.76
Bra016377.1-P	Field mustard	nucleus	88.02	63.24
Bra012329.1-P	Field mustard	nucleus	85.25	61.06
AT1G22490.2	Thale cress	nucleus	75.12	50.0
Bra016080.1-P	Field mustard	nucleus	73.73	49.23
Bra003886.1-P	Field mustard	nucleus	72.35	48.46
Solyc12g087850.1.1	Tomato	nucleus	35.94	48.15
Bra008017.1-P	Field mustard	nucleus	69.12	46.01
VIT_18s0001g06650.t01	Wine grape	nucleus	64.52	45.16
KRH16792	Soybean	nucleus	62.67	41.98
KRH62289	Soybean	nucleus	62.67	41.98
KRH53000	Soybean	nucleus	61.75	40.12
KRH72411	Soybean	nucleus	61.75	38.73
PGSC0003DMT400005446	Potato	nucleus	61.29	38.55
Solyc04g074810.2.1	Tomato	extracellular	61.29	37.46
PGSC0003DMT400045820	Potato	nucleus	48.85	35.81
Bra025007.1-P	Field mustard	nucleus	44.24	35.04
Bra031865.1-P	Field mustard	nucleus	34.1	33.95
Bra027958.1-P	Field mustard	nucleus	45.16	33.56
Bra004505.1-P	Field mustard	nucleus	41.47	33.21
Bra017533.1-P	Field mustard	nucleus	42.4	31.83
Bra007644.1-P	Field mustard	nucleus	39.63	30.82
Bra037414.1-P	Field mustard	nucleus	43.32	30.23
Bra020775.1-P	Field mustard	nucleus	26.27	28.36
Bra040483.1-P	Field mustard	nucleus	41.47	28.3
Bra001183.1-P	Field mustard	nucleus	25.81	27.05
Bra040234.1-P	Field mustard	nucleus	24.88	26.87
Bra028357.1-P	Field mustard	nucleus	40.55	22.0
Bra001929.1-P	Field mustard	nucleus	40.55	21.73
Bra028351.1-P	Field mustard	nucleus	35.48	21.39
Bra029088.1-P	Field mustard	nucleus	32.72	21.13
Bra022638.1-P	Field mustard	nucleus	30.41	18.86
Bra003073.1-P	Field mustard	nucleus	33.18	16.63

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra040856	EnsemblPlants:Bra040856.1	EnsemblPlants:Bra040856.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M4FIC7	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF26	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000253E9C7	InterPro:bHLH_dom	SEG:seg	:	:

Description

AT1G22490 (E=2e-081) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrScaffold000282:+:25878..27752

Molecular Weight (calculated)

24844.6 Da

IEP (calculated)

9.772

GRAVY (calculated)

-0.695

Length

217 amino acids

Sequence
(BLAST)

001: MEKHPPIQPR RKRRRTRSNK NKEEIENQRM THIAVERNRR KQMNEYLAVL RSLMPSSYAQ RGDQASIVGG AINYVKELEH ILQSMEPRRT TTTTHEVDTS
101: TSSLMSPFSE FFTYPQYSTK SSSSATENSS SPAEIEVTVA EGHANIKIMS KKKPRQLLKL VDSIQSLRLT LLHLNVTTLD DSILYSISVK VEEESQLNTV
201: DDIATALNQI IRRIQEE

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.