Factsheet for Bra016080.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96382	Canola	nucleus	99.08	99.08
AT1G72210.1	Thale cress	nucleus	80.31	81.56
Bra003886.1-P	Field mustard	nucleus	80.62	80.86
Bra008017.1-P	Field mustard	nucleus	76.31	76.07
Bra040856.1-P	Field mustard	nucleus	49.23	73.73
Bra016377.1-P	Field mustard	nucleus	61.85	66.56
Bra012329.1-P	Field mustard	nucleus	60.31	64.69
VIT_18s0001g06650.t01	Wine grape	nucleus	50.46	52.9
Solyc12g087850.1.1	Tomato	nucleus	25.54	51.23
KRH62289	Soybean	nucleus	49.85	50.0
KRH16792	Soybean	nucleus	48.92	49.07
KRH53000	Soybean	nucleus	48.92	47.6
PGSC0003DMT400005446	Potato	nucleus	49.54	46.67
KRH72411	Soybean	nucleus	48.31	45.38
PGSC0003DMT400045820	Potato	nucleus	41.23	45.27
Solyc04g074810.2.1	Tomato	extracellular	49.23	45.07
Bra031865.1-P	Field mustard	nucleus	26.46	39.45
Bra027958.1-P	Field mustard	nucleus	34.46	38.36
Bra025007.1-P	Field mustard	nucleus	31.69	37.59
Bra004505.1-P	Field mustard	nucleus	29.85	35.79
Bra017533.1-P	Field mustard	nucleus	30.46	34.26
Bra007644.1-P	Field mustard	nucleus	28.92	33.69
Bra037414.1-P	Field mustard	nucleus	31.69	33.12
Bra040483.1-P	Field mustard	nucleus	29.23	29.87
Bra020775.1-P	Field mustard	nucleus	18.15	29.35
Bra001183.1-P	Field mustard	nucleus	17.85	28.02
Bra040234.1-P	Field mustard	nucleus	16.92	27.36
Bra028357.1-P	Field mustard	nucleus	30.46	24.75
Bra001929.1-P	Field mustard	nucleus	30.46	24.44
Bra028351.1-P	Field mustard	nucleus	25.85	23.33
Bra029088.1-P	Field mustard	nucleus	22.46	21.73
Bra022638.1-P	Field mustard	nucleus	21.54	20.0
Bra003073.1-P	Field mustard	nucleus	23.08	17.32

Protein Annotations

EnsemblPlants:Bra016080.1	EnsemblPlants:Bra016080.1-P	EnsemblPlantsGene:Bra016080	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR11969	PANTHER:PTHR11969:SF26	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002541BCD	UniProt:M4DHV3	MapMan:15.5.32	:	:

Description

AT1G72210 (E=3e-126) | basic helix-loop-helix (bHLH) family protein (bHLH096)

Coordinates

chrA07:+:19530368..19533946

Molecular Weight (calculated)

36462.8 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.691

Length

325 amino acids

Sequence
(BLAST)

001: MALETVVYLQ DPLSYSSCKD FPFHDLYFQQ GEDQDPLDTK NNIKLGQEQR QGFGSINYNG KGGDNSVDYS YNDQVDLQWP LHELPYGSTV DTKNHPPPSD
101: MAATGGERRK RRRTRSNKNK EEIENQRMTH IAVERNRRKQ MNEYLAALRS LMPPCYSQRG DQASIVGGAI NYLKELEHQL QSMEPQVKTT ATKETRSTVG
201: DKNNTITASS SGPFSDFFAF PQYSSRPSSS SVAEGTAEIE VTMVESHASV KILAKKRPKQ LLKLVASIQS LRLTLLHLNV TTHDDSVLYS ISLKVEEGSQ
301: LNTVEDIAAA VNQILMRIEE ESPLS

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.